Alicyclobacillus cycloheptanicus: JI721_16645
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Entry
JI721_16645 CDS
T08830
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
acyc
Alicyclobacillus cycloheptanicus
Pathway
acyc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
acyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JI721_16645 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acyc03400
]
JI721_16645 (ligD)
Enzymes [BR:
acyc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JI721_16645 (ligD)
DNA repair and recombination proteins [BR:
acyc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JI721_16645 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
WDM01255
LinkDB
All DBs
Position
3523190..3524116
Genome browser
AA seq
308 aa
AA seq
DB search
MQVEAEHPVLITNPEKLLWPEAGVTKAQYMQYLVNVAPWLLAHLRDRPITMIRFPHGIHG
HSFYQKDAPQGAPEWVRTVPLWSDDRGEYIHPVVVDSVATLLWLANLACLEMHVGFATLQ
RPMTPTSIAFDLDPTVPGFEPVREVAMALHEVLEGLGLPHVPKTSGATGVQVFIPLANLD
NGAGHSYEETRLFTAAVATYLEQKLPRIVTLERLKKHRGDKVYVDYLQHGHHRTLIAPYS
ARATVHATVSTPLTWSELAGGAVPEQFTVHNVPSRLRKIGDLMNVGPGVRLEQITSVLKD
AKAICALR
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgcaagttgaagctgaacaccccgtgctcatcaccaacccggaaaaactgctgtggccg
gaggccggcgtgaccaaagcacagtacatgcagtacctcgtgaatgtggcgccgtggctg
ttggcgcacctgcgcgatcggcccatcaccatgattcggtttccgcacgggattcacggg
cactcgttttatcagaaggacgcgccgcagggggcaccggagtgggtgcgcacggtgccg
ctttggtcggacgatcgcggcgagtatatccaccccgtcgtcgtcgactcagtcgccacc
ctgttgtggctggcgaacctggcctgtctggaaatgcacgtcggcttcgccacgcttcag
cgcccgatgacgccgacgagtatcgcctttgatttggaccccaccgtgcccggcttcgag
ccggtccgggaggtcgcgatggcgctgcacgaagtgctggaggggctgggtctgccgcat
gtcccgaagacatccggcgcaacgggggtgcaggtgttcattccgctggccaacctggac
aacggagcgggtcattcgtatgaggaaacgcgcctgtttaccgccgccgtcgcaacgtac
ttggagcagaagctgccccgcatcgtgacactggaacggctgaagaagcatcgcggcgac
aaggtgtacgtggactacctccagcacggacaccaccgcaccctcattgccccctacagc
gccagggctaccgtgcatgcgactgtctccacgccgctgacgtggagcgaactcgccggc
ggtgccgtccccgaacaattcaccgtgcacaatgtgcccagccggctgcgcaagatcggc
gatttaatgaatgtcggccccggcgttcggctcgaacaaatcacctcggtcctcaaagat
gcgaaagccatctgcgcgctgcgatga
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