Tsuneonella dongtanensis: A6F68_01381
Help
Entry
A6F68_01381 CDS
T04466
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ado
Tsuneonella dongtanensis
Pathway
ado03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ado00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A6F68_01381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ado03400
]
A6F68_01381
Enzymes [BR:
ado01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A6F68_01381
DNA repair and recombination proteins [BR:
ado03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A6F68_01381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ANY19897
UniProt:
A0A1B2ACN1
LinkDB
All DBs
Position
complement(1414966..1417482)
Genome browser
AA seq
838 aa
AA seq
DB search
MARRDPLSEYNAKRDFGKTPEPAGKAESSAGGDLFIVQKHDATRLHWDFRIEVDGVLKSW
AVTKGPSPDPDIKRLAVRTEDHPMSYAEFEGTIPKGEYGGGTVMLWDRGTWAPIAGKSAK
DLDKGHLHFTLDGERMKGEWLLIRLKPRPGEKRENWLLRKIADEHAQEGDGLVERELTSV
LTGRSMAEIAADKAGEYSLAGKKDDAFLAQMEKAAAHNAGKSRKRKAGRSAPLPKFRKPQ
LATLVDDVPSGNRWMHEIKFDGYRALVAVKGKDVRVYTRNGKDWTDKFSPLVKAIAALDL
PPSLIDGEIVATDGDGNPSFSALQAVLKRGHGAQKAGDALEFHAFDLLELGGEDLAALPN
IERKERLEALLGTADAPIHVADHVIGAGEKLYRTMCDAGQEGIISKTIDGTYASRRSKSW
VKVKCTRRQEFVIVGWKKSSAKGRPFASLLLAQNEGDKLVYKGNVGTGFDATTMDDLAKR
LRPLERKTAPVEVDRTSARGVTWVSPKLVAEIAFAEFTADGNVRHGSFVGLRGDKKSADV
VPEKAAPAPEEDEPVAISSRERVIFPDSGQTKGDLADYYAAVAPIMLPFAARRPISLVRC
PQGRAKKCFFQKHDSGSFGDAVHHVPIREKDGGSEDYLYVEDLRGLLQCVQMGTIEFHGW
AARSDAVEMPDRMIFDLDPDEGLGFDDVKTAATDIRDRLADMGLVSFAMLSGGKGVHVVV
PLSTGHSWDEHKDFARHFAEALSLAEPDRFVATMSKAKRKGKIFIDWLRNQRGSTAVLPY
SARARSGAPVAVPIAWNELKTMDNAHPFSIDDAKRLLDRAGSKALAGWGFAEQSLPEY
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgccgcgaccccctgtccgaatacaacgccaagcgcgacttcgggaagacgccc
gaaccggcgggcaaggccgagagcagcgccggcggcgaccttttcatcgtccagaagcac
gatgcgacccgcctgcactgggactttcgtatcgaggtcgatggcgtgctgaaaagctgg
gcggtcaccaaagggccctcgcccgaccctgacatcaagcggctcgcggtgcggacagag
gatcacccgatgtcctacgccgagttcgaaggcacgatcccgaagggcgaatacggcggc
ggcacggtgatgctgtgggaccggggcacatgggcgccgatcgcggggaaaagcgcaaag
gacctcgacaaggggcacctgcacttcacgctcgacggagaacggatgaagggcgagtgg
ctgctgatccgcctcaagccgcggcccggcgagaagcgcgagaactggttgctgcgcaag
atcgccgacgaacacgcgcaggaaggcgacggccttgtcgagcgcgagctcaccagcgtg
ctgaccgggcgatccatggcagagatcgcggccgacaaggccggcgagtactcgctcgcc
ggcaagaaggacgacgctttcctcgcccagatggaaaaggcggcggcgcacaatgcgggc
aagtcccgcaagcgcaaggccggtcgatcggcgcccttgccgaagttccgcaagccgcag
ctggccaccctggtcgacgacgtgccgtccggaaaccgctggatgcacgagattaagttc
gacggataccgcgcgctcgtcgcggtcaagggcaaggacgtgcgcgtctatacccgcaac
ggcaaggactggaccgacaagttctccccgctcgtgaaggcgatcgccgcgctcgacctt
ccgccctcgctgatcgatggcgagatcgtcgccaccgacggcgacgggaaccccagcttc
tcggcactgcaggccgttctcaagcgcgggcacggtgcccagaaggcgggcgatgcgctg
gaattccacgcgttcgacctgctcgagcttggcggagaggaccttgccgcactgcccaac
atcgaaaggaaggagcgtctcgaagcgctgctcggcaccgccgacgcgccgatccacgtc
gccgaccacgtcatcggagcgggcgagaagctctatcgcactatgtgcgatgcgggacag
gaagggatcatctccaagacgatcgatggaacttacgcgagccgccggtcgaaatcctgg
gtgaaagtgaaatgcacccggcggcaggagttcgttatcgtcggctggaagaagtcgagc
gcgaagggccgcccgttcgcgtcactgctcctcgcccagaacgaaggggacaagctcgtc
tataaaggcaacgtcggcaccggattcgatgcgacgacgatggacgacctggcgaagaga
ttgcggccgctcgaacgcaagaccgcgccggtcgaggtcgacaggacttcggcgcgcggg
gtaacctgggtgtcgcccaagctcgtcgccgagatcgcattcgccgaattcaccgccgac
ggaaacgtgcgtcacggcagcttcgtgggattgcggggcgacaagaagtcggccgatgtc
gtgcccgagaaggcggcgcctgcgcccgaggaagacgagccggtcgcgatttccagccgc
gagcgcgtgatatttcccgacagcggccagaccaagggcgatctggccgactactacgcg
gccgtagcgccgataatgctgccgttcgcagcgcgccgccccatcagcctcgtccggtgt
ccgcagggccgcgcgaagaaatgcttcttccagaagcacgacagcggcagtttcggcgac
gcggtgcaccacgttccgatccgcgaaaaggatggcgggagcgaggactacctctacgtc
gaagacctgcgcgggctcctgcaatgcgtgcagatgggcacgatcgaattccacggctgg
gctgcgcgcagcgatgcagtggaaatgcccgaccggatgatcttcgacctcgacccggac
gagggtctcgggttcgacgacgtgaagaccgcagcgaccgacatccgcgaccggctcgcc
gatatgggcctcgtcagcttcgcgatgctgtcgggcggaaagggcgtgcacgtcgtcgtg
ccgctttcgactggccattcatgggatgagcacaaggatttcgcgcggcacttcgccgaa
gccctgtcgctcgccgagcccgatcggttcgtcgcgacgatgagcaaggccaagcgcaag
ggcaagatcttcatcgactggctgcgcaaccagcgcgggtcgaccgcggtcctgccctat
tcggcccgcgcacgcagcggcgcaccggtcgcggttccgatcgcatggaacgagctcaag
acgatggacaacgcccaccccttcagcatcgacgacgcaaagcgcctgctggaccgtgcg
gggtccaaggccttggccggatggggcttcgccgagcagagcctgcccgagtactga
DBGET
integrated database retrieval system
