Acromyrmex echinatior (Panamanian leafcutter ant): 105149771
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Entry
105149771 CDS
T03917
Definition
(RefSeq) collagen alpha chain CG42342 isoform X1
KO
K16617
collagen, type XIII, alpha
Organism
aec
Acromyrmex echinatior (Panamanian leafcutter ant)
Brite
KEGG Orthology (KO) [BR:
aec00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
aec00536
]
105149771
Glycosaminoglycan binding proteins [BR:
aec00536
]
Heparan sulfate / Haparin
Extracellular matrix molecules
105149771
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
105149771
NCBI-ProteinID:
XP_011060714
LinkDB
All DBs
Position
Unknown
AA seq
703 aa
AA seq
DB search
MENDPAAKSWPSGPATGKGSSPSCLEASMPRKFRDGDLRAGTVGLNWALCALCLASFAVS
GVLFYRELGLESRIASLEARCMRVQDPSSPVEVLVQRLKAEMQEQLRQTQRLDSTAIFRP
KRDISECNCPPGPPGEPGPPGKRGKKGKKGDPGEPGAPGVAGTPGKNGFPGPIGLDGPKG
DPGRPGDKGQKGELGSPGFDVLSAVKVNAQGLGLKRSVTTLRGGTLGYAEIVALKGEPGE
PGPPGPPGPPGAEGLPGHEGRQGIPGEVGAPGEKGPPGPIGPIGPTGTPGLAGPKGDKGD
KGDRGFTTTLKGEQFPSGVFEGPPGPPGPPGSPGEKGELGPTGPPGLPGEKGTRGKQGKR
GFKGESGLALARGAPGLPGPKGEPGERGYRGEKGAMGDAGLPGPKGEMGLQGLQGLNGTD
GDPGIQGPPGLPGISGPKGEKGDYGDIGPPGLMGPPGLPGPPGYPGLKGEKGEKGESKYK
KLRRRQGDGTFEMNAGEVIMGPPGPPGPAGTPGLQGPPGIKGDRGHDGAKGDPGEKGAKG
DPGPMGLPGPMGLRGESGKPGDSGKPGAMGSPGLDGMKGAQGEPGTKGERGDPGLPGTDG
IPGAEGPKGEKGAKGESGPPGKRGRKGDKGNKGDQGVPGLDAPCPLGPDGLPLPGCGWRP
PQQDITSTSVPAIEGPEPAETDYEEPEDEYDDYTDPNGNLAEQ
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggagaacgacccggcggccaagtcctggccgtcgggcccggcgacgggcaaaggatca
tcgccgtcctgcctggaggcgtcgatgccgcggaagttccgcgatggagacctccgtgcg
gggaccgtgggcctcaattgggcgctgtgcgccctctgcctcgccagcttcgccgtgtcc
ggcgtgctcttctaccgcgagctcggcttggagtccaggatcgcgagtttggaagcacgc
tgcatgcgcgtccaggatccttcgtcgccggtggaagtcctggtgcagaggcttaaggcg
gagatgcaggagcaactgcggcagacgcaacggctcgattccacagcgatcttcaggccc
aaacgcgacatctccgagtgtaattgtcctccaggtccacccggtgagccgggtccaccc
ggaaagaggggcaagaaagggaaaaagggcgatcccggggagcccggtgcgccgggtgtg
gccgggacgccgggcaagaacggttttccgggacccatcggcttggacgggcccaaaggt
gatccgggccgacctggcgacaaagggcagaagggcgagctgggcagccccggattcgat
gtcttgtccgcagtaaaggtcaatgcacagggattggggttaaagaggtcggtgacgacg
ctccgcggcgggacgctcggctacgcggaaatcgtcgccctcaagggagaaccgggtgaa
cccgggccgccgggaccacccggtccgccaggagccgagggtcttcctggacatgagggc
agacaggggattccgggcgaggtcggcgcaccaggggagaagggcccgcccgggccgatc
ggacccatcggcccgacgggcacgccaggacttgcaggtcccaagggtgacaagggtgat
aaaggcgatcggggcttcacgacgaccttaaagggtgagcagtttccaagtggagtattt
gagggcccacctggtccaccaggaccacctggatctccgggcgagaagggagaactgggc
ccgacaggaccgcccggcctacccggcgagaagggtactcggggaaagcaagggaagagg
ggtttcaagggtgagagcggtttggcattggcgaggggtgcccccggcctgccgggtccg
aagggtgagcccggcgaacggggttaccggggcgaaaagggcgccatgggagacgcgggt
ttaccagggcccaagggagagatgggactgcagggcttgcaggggctcaatggaaccgac
ggcgatcctggtatccaaggaccccccggattaccgggaatatccggacccaaaggtgaa
aagggcgactacggcgatattggtccccccggccttatgggacctccgggtctacccggc
ccaccgggctatcctggattgaaaggcgaaaagggagagaaaggcgaatcgaagtacaaa
aagctcaggcgaagacagggagacggcacgttcgagatgaacgccggggaagtgataatg
ggcccacccggacccccaggacccgctggtacccccggactgcagggcccacccgggatc
aagggtgacagaggacacgatggcgccaagggcgatcctggagaaaagggtgccaaaggg
gatcctggtccgatgggactgcccggccccatgggactgaggggagagtccggaaagccc
ggggattccgggaaacctggcgccatgggatcaccaggattagacggcatgaagggcgcg
cagggcgagccaggaacgaagggagaaagaggagatccgggattgcctggtaccgatgga
attcccggtgcggagggaccgaagggagagaaaggtgccaaaggcgaatctgggccgccg
ggtaaacgcggcagaaaaggcgacaagggcaacaagggagatcaaggtgttccaggattg
gatgccccatgtccgctgggaccggatggactccccttaccgggctgtggctggagacca
ccgcagcaggacatcacgagcacgtccgtgccagcgatcgagggtcctgagcccgcggaa
acggattacgaggagccggaggacgagtacgacgactatacggacccgaacgggaatcta
gctgagcaataa
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