Aeromonas sp. ASNIH5: C2U30_03970
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Entry
C2U30_03970 CDS
T05873
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aes
Aeromonas sp. ASNIH5
Pathway
aes03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C2U30_03970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aes03400
]
C2U30_03970
Enzymes [BR:
aes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C2U30_03970
DNA repair and recombination proteins [BR:
aes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C2U30_03970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AUT40925
UniProt:
A0A2I8D138
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All DBs
Position
886089..889553
Genome browser
AA seq
1154 aa
AA seq
DB search
MMPMTLPALPAKAGQKTTFGQLVGSSLALVAARLTREARRPVLLVTADTPSALRLEQELG
FLLADQDCPVLLFPDWETLPYDSFSPHQDIISQRLETLYQLPQMRHGVLIVPISTLMLRT
APQAYLDKYSLMVTSGQRLNLQQLRGRLAEAGYVAVEQVLEHGEFAARGSLLDLFPMGSS
RPYRIDFFDDEVDSIRPFDPETQRSSEPVKSVSLLPAREFPTDEGAIELFRGQYREQFEI
SRAEGSVYQEVSKGRWPAGIEYYLPLFFQQTASLFDYLPENTLLLTVGEIYPAAQRFWND
IGQRYEDRRWDNTRPLLPPQQIYLSVEQLFAALGDYGAVRLQEATVDGGAGQQDLPLAPL
PDLQLDHSKEQPLQALDGFLQGFAGRTLFAVESEGRREGLGDLLARINLQPREFASLDAF
LVSDARHGLLVCPLERGFLLQEPGQTPLALITEAELLGGKIRSKRQRDKNKNLSSDAVIR
NLGELTQGQPVVHLDHGVGRYLGLETIDAGGLPTEFLTLEYAGGDKLFVPVTSLHLISRY
TGSDNPPSHKLGGEAWVKARRKAAEKVRDVAAELLDVYAMRAARHGFAFKHDREAYRQFA
ASFPFEETEDQLNAINAVLGDMCQAKSMDRLVCGDVGFGKTEVAMRAAFVAVHGGKQVAV
LVPTTLLAQQHYDNFRDRFANWPVRVEVLSRFRSAKEQSAVMKEMAEGKVDIIIGTHKLL
GAELTFKDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMSGMRDLS
IIATPPAKRLAIKTFVRQHEPAVVREAVLRELKRGGQVYYLHNDVESIEKCAADLAELVP
EARIGIAHGQMRERELERVMSDFYHQRFNLLVCTTIIETGIDVPSANTIIMDRADHLGLA
QLHQLRGRVGRSHHQAYAYLLTPHPKLMTKDAAKRLEAIASLEDLGAGFALATHDLEIRG
AGELLGDDQSGQIESVGFTLYMEMLEQAVEALKHGKEPSLEQLMSQHTEVELRLPALLPD
DYIPDVNMRLSMYKRIASAADEQELRELKVELIDRFGLLPEPTKTLMELAAFRQRATALG
IRRVEMSERGGYLDFTQETRVNPAYLVKLLSEQPRIYKMDGPTRLRFQVPTQDRAMRLKL
VDGLLADLARHATP
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgatgccaatgaccctccccgccttgcccgccaaagcgggccagaagacaacgttcggc
cagctggtcggcagcagcctggctctggttgccgcccgcctcacccgggaagcccgaaga
cccgtcctgctggtcaccgccgataccccgagcgccctgcgccttgaacaggaactgggg
ttcctgctggcggatcaggattgcccggtgctgctgttcccggactgggagaccctgccc
tacgacagcttctctccccaccaggacatcatctcccagcgcctcgagaccctctaccag
ttgccgcagatgcgccacggcgtgctcatcgtgcccatctccaccctgatgctgcgcacg
gcgccccaggcttatctcgacaaatacagcctgatggtcacaagcggccagcgcctcaac
ctgcagcagctgcgcgggcgtctggcggaggcgggctacgtggcggtggaacaggtgctg
gagcacggcgaattcgccgcccgcggctccctgctggatctcttccccatggggagcagc
cgcccctatcgcattgattttttcgacgacgaggtggactccatccgcccgttcgacccc
gagacccagcgctccagcgagccggtgaagtcggtgagcctcctgcccgcacgggaattt
cccaccgacgagggggccatcgagctgtttcgtggccagtatcgcgaacagttcgagatc
tcccgcgccgagggctccgtctatcaggaggtgagcaaggggcgctggcccgccggcatt
gaatactacctgccgctcttcttccagcagaccgccagcctgtttgattacctgcccgaa
aacaccctgctgctcaccgtgggggagatctaccccgcggcccagcgcttctggaacgac
atcggccagcgctatgaagacagacgctgggacaacacccgtcccctgctgccgccccag
cagatctatctgtcggtggagcagctcttcgccgccctcggggactatggcgccgtgcgt
ctgcaggaggcgaccgttgacggcggagcgggtcagcaggatctgcccctcgcccccctg
ccggatctgcagctcgaccacagcaaggagcaacccctgcaggcccttgacggcttcctg
caaggctttgccgggcgcaccctgtttgcggtggagtccgaggggcggcgcgaggggctc
ggggatctgctcgcacggatcaacctgcaaccccgggagtttgcttccctcgacgccttc
ctggtgagcgatgcgcgccacgggctgctggtctgtcccctggagcggggcttcctgctg
caagagcccggccagacgccccttgccctcatcaccgaagccgagctgctcggcggcaag
atccgcagcaagcgccagcgggacaagaacaagaacctgagctcggatgcggtgatccga
aacctgggcgagctgactcagggccagcctgtggtgcacctggatcacggggtcggtcgc
tacctggggctcgagaccatagacgcaggcggcctgcccaccgagtttctgaccctggaa
tacgccggcggcgacaagctgttcgtgccggtcaccagtttgcacctgatcagccgctac
accggctccgacaacccgcccagccacaagctcggcggcgaggcctgggtcaaggcgcgg
cgcaaggcggcggaaaaggtgcgggacgtggcggccgagctgctggatgtctatgccatg
cgggcagcccgtcacggttttgccttcaaacacgaccgggaggcctaccgccagtttgcc
gcgagcttcccgttcgaggagaccgaggatcagctcaatgccatcaacgctgtgctcggc
gacatgtgccaggccaagagcatggatcggctggtgtgcggcgatgtgggctttggcaag
acagaagtggcgatgcgggcggcgtttgtggccgtgcacggcggcaagcaggtggccgtg
ctggtgcccaccaccctgctcgcccagcagcactacgacaacttccgcgaccgattcgcc
aactggccggtgcgggtggaagtgctgagccgcttccgctccgccaaggagcagagcgcc
gtgatgaaggagatggccgagggcaaggtcgacatcatcatcggcacccacaagctgctg
ggcgccgagctcaccttcaaggatctgggcctgctcatcgtcgacgaggagcaccgcttc
ggggtgcgccagaaggagaagatcaaggcgctgcgcgccgacgtggatatcctcaccctc
accgcgacccccattccccgcaccctcaacatggccatgtccggcatgcgggatctctcc
atcatcgccaccccgcccgccaagcgcctcgccatcaagaccttcgtgcgccagcacgaa
cctgcggtggtgcgcgaggcggtactgcgggaattgaagcgcggcggccaggtctactac
ctgcacaacgacgtggagagcatcgagaagtgcgccgccgatcttgccgagctggtgccg
gaggcgcgcatcggcatcgcccacggccagatgcgcgagcgggagctcgagcgggtgatg
tcggacttctaccaccagcgcttcaacctgctggtctgcaccaccatcatcgagaccggc
atcgacgtcccgagcgccaacaccatcatcatggaccgggcggatcatcttggtctcgcc
cagctgcaccagctgcggggccgggtcggtcgctcccaccaccaggcctatgcctacctg
ctcaccccccatcccaagctgatgaccaaggatgcggccaagcggctggaggccatcgcg
tccctcgaagatctcggtgccggctttgcgctcgccacccacgatctggagatccggggc
gcgggtgagctgctgggcgacgatcagagcggccagattgaatcggtgggcttcaccctc
tacatggagatgctggagcaggcggtggaggcgctcaaacatggcaaggagccgtcgctg
gagcagctcatgagccagcacaccgaggtagagctgcgcctgcccgccttgctcccggac
gactacatcccggacgtcaacatgcgcctctccatgtacaagcgcatcgccagtgcggcg
gacgagcaggagctgcgggagctcaaagtggagctcatcgatcgcttcggtctcttgccg
gagccgaccaagacgctgatggagctggccgccttccgccagcgcgccacggcgctgggc
attcgccgggtggagatgagcgagcgcggcggctatctggactttacccaggaaacccgc
gtcaacccggcctatctggtcaagctgctctcggagcagccgcgcatctacaagatggac
gggccgacccggctgcgcttccaggtaccgacccaggacagggccatgcgcctcaaactg
gtggacggcctgctggcggatctcgcccgccatgccaccccctga
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