Aythya fuligula (tufted duck): 116491095
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Entry
116491095 CDS
T07966
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
aful
Aythya fuligula (tufted duck)
Brite
KEGG Orthology (KO) [BR:
aful00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
aful00536
]
116491095 (COL13A1)
Glycosaminoglycan binding proteins [BR:
aful00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116491095 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
116491095
NCBI-ProteinID:
XP_032046634
UniProt:
A0A6J3D859
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Position
7:4944691..5026542
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AA seq
790 aa
AA seq
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MLEEKSWKGVGEAAFDRGCVAPPRTGDGERCCRLPLLLGSGLPGVSLLSLVLSLLLYFRT
SDLQSRVSHLEADRPTQLPAWLSADQMETAILGRVDQLLDEKLKFHLPRHREVRDAHQRC
NCPAGPPGPTGRPGLPGDKGAMGIPGRPGLKGQPGEKGAPGEAGMSIIGPRGPPGQPGTR
GFPGFPGPIGLDGKPGHPGQKGEMGAAGPRGQPGPPGQKGEKGQCAEYPHREYLSTTLAA
LRSNQILTLKGEQGQAGIQGPPGPPGPPGPSGPAGPEGTPGQPGPVGPPGRVGEPGKPGR
DGKGLPGPPGPKGDPGIQGYPGRKGEAGMAGLPGAHGLPGASGPKGEKGDAGIKGAPGLA
AAGMKGEPGTPGEKGQPGVPGRMGPPGLPGKRGQRGEKGRAGDPGLPGLPGLKGEKGNSE
NALAGGKGEPGPPGLPGPPGPKGEAGDVGAAGPQGEKGEPGAPGEQGPMGPRGPKGEPGK
DEMMDYDGNISEALQEIRTLALMGPPGLPGVAGPPGPPGQKGEIGLPGPPGHDGEKGPRG
KPGEMGPPGPHGLPGKDGPPGIKGEPGHAGAAGQKGDKGEPGQAGSPGLDGPTGEKGERG
DQGMPGPSGLPGPIGLPGLTGEKGEPGERGDKGNPGESMSGPPGPQGPPGPPGAQGLPGP
KGEAGIDGMKGEKGAQGEKGDRGPLGLPGASGLDGRPGPPGTPGPMGVSGPAGPKGERGS
KGDPGVVGPMGPAGLPGLQGLPGDKGIRGERGKKGSRGSKGDKGDQGAPGLDAPCPLGED
GLPVQGCWNK
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgttggaggagaagagctggaaaggcgtgggcgaagcagcttttgacagggggtgcgtg
gctccccccaggaccggcgacggggagagatgctgccgcctgcctctcctgctgggctcg
gggctgcccggcgtctccctgctctctctggtgctcagcctcctgctttactttcggacc
tctgatctgcagtcccgggtgtcccacttggaagcggacagacccacgcagctccctgcc
tggctctcagcagaccaaatggagacggctattttgggaagagttgaccaactgcttgat
gagaaattaaagtttcacttgccaagacatcgagaagttcgagacgcgcaccagcgatgc
aactgcccggcaggtccaccaggtcctacaggaagaccaggccttccgggagacaaaggc
gccatggggattcctggacggccgggactaaaagggcaacccggagagaagggtgctcca
ggagaagcaggcatgtccatcatcgggccccgcggtccacccggacagcctggaactaga
ggttttcctggattcccgggccctattggcttggacggcaaaccgggccatcctggacag
aagggggagatgggtgctgcaggtcccaggggacaaccaggacccccgggacaaaaagga
gaaaagggtcagtgtgcggagtacccccacagggaatacctaagcaccaccctcgcagcc
ctgcgctctaaccagatccttacgctgaagggcgaacaaggacaagcaggaatccaaggt
ccgccggggccccctggcccgccagggccctctggaccggctggacccgagggaacccca
ggacagcccgggccagttgggccgcccggccgagtgggagaaccggggaagcctggcaga
gatggaaagggcttacctgggcctcctggaccaaagggagaccctgggattcagggatac
cccggcagaaagggggaggcgggcatggcaggcctgcctggtgcgcacggcctccctgga
gcttcgggccccaagggtgaaaaaggggacgccggcataaagggagcccctgggttggcc
gccgccgggatgaagggtgagcctgggactccaggagaaaagggacagcccggagtccca
gggaggatgggccccccaggtttgccagggaaaagggggcagcggggggagaagggacga
gccggtgaccctgggcttcccggactccccggcctgaagggcgagaaggggaatagtgag
aatgccttggcaggagggaaaggggaacccggccccccaggtctgcctgggccccctgga
ccaaagggagaagctggtgacgttggcgccgcaggaccgcagggggaaaagggggagcct
ggcgcaccgggagagcagggacccatgggcccacggggccccaaaggagagcccgggaag
gatgaaatgatggactacgatggcaacatcagtgaagctctccaggaaatacgaactttg
gccttgatgggaccaccagggcttccgggtgtggctggacctccagggccaccaggacag
aagggtgaaattggcttgccgggtcctccaggccacgatggagaaaagggaccacggggc
aagccaggagaaatgggtccccctggccctcatgggctgccaggaaaggacggacctcct
gggataaagggagagcccggccacgctggggctgcagggcagaagggggataaaggagag
ccaggacaagccggctcaccgggtcttgatggccccactggagagaaaggcgaacgaggt
gaccaagggatgccaggaccgtcaggactgccgggtcccattggacttccaggattgaca
ggagagaagggcgagcctggggagcgtggagacaaaggaaacccaggagaatcgatgtct
ggcccccctggacctcaaggaccaccaggacctccgggtgctcagggcctcccgggaccg
aagggggaagcagggattgatggaatgaaaggagagaagggtgcccagggtgaaaaagga
gacagagggccactgggattacccggtgcttcaggtttggacggcaggcctgggccaccg
ggcactccaggaccaatgggggtttcgggaccagcaggaccaaaaggagaaaggggcagt
aaaggagatcctggtgttgtaggaccaatgggaccagcaggacttcccggtttacaaggt
ctgcctggtgacaaaggaatccggggggagaggggcaagaaaggctctagagggtctaaa
ggggataagggagaccaaggagcgcctggattagatgcaccctgtccgttgggagaagac
ggcctcccggttcaaggctgctggaacaagtga
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