Arachidicoccus ginsenosidivorans: FSB73_20085
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Entry
FSB73_20085 CDS
T06150
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
agi
Arachidicoccus ginsenosidivorans
Pathway
agi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
agi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FSB73_20085 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agi03400
]
FSB73_20085 (ligD)
Enzymes [BR:
agi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FSB73_20085 (ligD)
DNA repair and recombination proteins [BR:
agi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FSB73_20085 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
QEC73623
UniProt:
A0A5B8VQU1
LinkDB
All DBs
Position
complement(5003909..5006953)
Genome browser
AA seq
1014 aa
AA seq
DB search
MPEKNLKKYVEKRHFDQTPEPKGGKGTAAKLHFVIQKHDASRLHYDFRLEMEGVLKSWAV
PKGPSLDPAVKRLAMQVEDHPYDYKDFEGIIPKGNYGAGTVIVWDEGTYEPIDGSQAKNK
KAMEKSLLAGLKSGDLKFRLFGEKLQGEFALVKTHGGNMAENAWLLIKHKDEAVSKKDLS
KLDKSVISGKTIQQMEKAPSETYGKKTSKKATPTKRATEESKKTPKKQAIKKEAKKSTSK
STPKSSPKTNHNSAKSQKGDRETKRHKPKRAKPAEKTPKDEESVAKNLDWRQILKKLPET
AMPTKIQPMLATLVDAPFDDPEWNFEIKWDGYRAIAYVELKGKAQPKTSVHIKSRNQKDF
EQKYYPIRTSLEKLTETMVLDGELVVVDEAGMPQFGALQNWRSESDGTLLYYVFDLLWYK
GKDLRDLPLSIRKAVLEIVLQNQVDTNIRLGYLVKQNGIGFLGSVAELGLEGIVAKKADS
IYESGRRSKSWLKIKVELRQEVILIGYTLNHGSSKKFSSLLLGVYKNGKVQYAGKVGTGF
SDKDQLTLLKHFKPYIRKTSPLEKAVDVDKPSRFRPNPPGSDVTWLNPRLVGEVSYRERT
ADGLFRHPSFKGLRPDKDPKEVVLEEKTSTQQLLNETDNTMEISKKVAKKAAKKAVVKQP
KAEADIKSKSKRVTSNKKISNITKTKDDLKTAMAPIEGKTGHKTLLNPTEKTQVKTVAGK
KLQFTNLDKLYWKKEQIDKRTLINYYYQMAPFILPYLKGRPQSLNRFPDGVTGQNFYQKD
VTGKVPDWASLYLYHSEGDKSDKHFLVADGMAALLYMASLGCIEMNPWSSTIKKPENPTW
CIIDLDPDKNKKGQKAFEEVITAAQVTHEVLESMGVEGYPKTSGASGIHIYIPLGDKYSY
EQSKLFAKLIVTAVHEQLPKFTTLERTVADRQGKMYLDFLQNRPQATIAAPYSVRPKPGA
TVSMPLDWSEVKTGLKREDFNIHNAVQRVEKIGDLFKPVLGKGIDLKKILAKVK
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgccggaaaagaacctcaaaaaatatgtagaaaaacgccattttgaccaaaccccagag
cccaaaggaggtaagggaacggcagctaaattgcattttgtaatccaaaaacatgacgct
tccagattgcattatgattttagattggaaatggaaggggtgctcaaaagttgggcggtt
cccaaaggaccttcactggatccggccgttaaacgcctggctatgcaagtagaagatcac
ccatatgactataaagattttgaaggcattatccctaaaggaaactatggtgctggaacg
gttatcgtctgggacgaaggaacttatgaacccattgacggttcacaagcaaagaacaaa
aaggcaatggaaaagtctttactggcgggactaaaatcaggagacctcaaattcaggtta
tttggtgaaaagttgcagggtgaatttgccttggtaaagacacatggaggcaatatggca
gaaaatgcctggttacttataaaacataaggatgaagcggttagcaaaaaggacctgagt
aaactcgataagtcagttatcagcggaaagaccattcaacaaatggaaaaggcgccctct
gagacctatggtaaaaagacaagtaaaaaggcgacgcccacaaaacgtgcaactgaggaa
tctaaaaaaacgccaaagaaacaggccataaaaaaagaggcgaaaaaatcaacgtcaaaa
tcaacaccaaaatcatcacccaagaccaaccataactcagccaagtcccaaaaaggagac
agggaaacaaagcgtcataagcctaaaagggcaaaaccagcagaaaagacacctaaagat
gaagaatcggttgcgaaaaatttagattggcggcaaatcctgaaaaaattgcccgagacg
gcgatgcctacaaaaatccagcctatgctggctactttagtagacgcaccttttgacgat
ccggaatggaattttgaaatcaaatgggatggatatcgcgccatagcttatgtggaactc
aagggtaaagcccagccaaaaacgtctgtacacataaaaagtcgtaatcaaaaagacttt
gagcaaaagtactatccaataagaacttcactggaaaagctgaccgagacaatggtcctg
gatggagagctcgttgtcgtggatgaggcaggtatgccgcaatttggtgctttgcagaat
tggcgtagtgagtcggatggcactttgctttattatgtatttgatctgctatggtataaa
ggaaaggatttacgtgatttacccttgtccattcgtaaggccgtcttagaaattgtgctg
caaaaccaggtggatacaaatatccgacttggttaccttgttaagcaaaacggaataggc
tttttgggtagtgtggctgaattaggtcttgaaggcattgttgccaaaaaagcagacagc
atttatgaatctggacgccgctccaaatcctggctcaaaattaaagtagaactaagacag
gaagtcatcctcattgggtataccttgaatcatggttcttcaaaaaagttcagctcttta
ctgcttggcgtctataaaaacgggaaagttcagtatgctggcaaagtcggcactggcttt
agtgacaaagatcagcttaccttactcaagcattttaaaccctatatacgcaaaaccagc
ccattggaaaaagcggtagatgtagacaaaccatccagatttcggcccaacccacctggc
agtgatgttacctggctcaatcccaggctagtgggagaggttagctaccgcgaaagaaca
gcagatgggttatttcgtcacccttcttttaaaggactgcggccggacaaagatccgaag
gaggtcgttttggaggaaaaaaccagtacccaacaattactaaatgaaacagacaatact
atggagatctcaaaaaaggtagcaaaaaaggcagctaagaaggcggttgtcaaacaacca
aaggctgaagctgatatcaagtcaaagtccaagagggtgacttcaaataagaaaatatca
aatataactaagaccaaagacgacctgaaaaccgctatggcgcctatcgagggaaaaact
ggtcataaaaccctactgaatccaactgaaaaaacgcaggtcaagacagtggcgggcaaa
aagttacaatttaccaacctggataaattatactggaaaaaagagcagatagataaacgg
acgcttatcaattactattaccagatggctccctttattttaccctatttaaaaggacgc
ccccaatccctaaaccgtttcccggatggggtcaccggacaaaatttttatcaaaaggat
gttaccggaaaggtgccggactgggcaagtctttatttatatcatagtgaaggtgataaa
tcggataaacactttttggtagcagatggaatggcagctttgttatacatggcatcactg
ggctgtatagaaatgaatccctggagcagcaccattaaaaaaccagaaaatcccacctgg
tgcattattgatttagatcctgataaaaacaaaaaaggacaaaaggcctttgaagaagtc
atcacagcagcccaggtaacccatgaagtacttgaaagtatgggggtcgaaggctatcct
aaaacaagtggtgccagtggcatacatatttatataccactgggtgataagtatagttat
gaacaatccaaactatttgcaaaacttattgtcaccgccgtacacgagcagttgcctaaa
tttaccacattagaaagaacggtggcagatagacaagggaaaatgtatttggattttcta
caaaaccgtccgcaggcaaccatcgcggccccatattctgtccgtcccaaacctggcgca
acagtatccatgcccctggattggtccgaagtcaaaacaggtcttaaacgagaagatttc
aatattcataatgccgtgcaaagggtggagaaaattggggatttatttaaacctgtattg
ggcaagggtatcgatcttaaaaaaatattggccaaagtaaaataa
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