Agrobacterium sp. 33MFTa1.1: EYD00_12570
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Entry
EYD00_12570 CDS
T05906
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
agt
Agrobacterium sp. 33MFTa1.1
Pathway
agt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
agt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EYD00_12570 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
agt03019
]
EYD00_12570 (recQ)
03400 DNA repair and recombination proteins [BR:
agt03400
]
EYD00_12570 (recQ)
Enzymes [BR:
agt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EYD00_12570 (recQ)
Messenger RNA biogenesis [BR:
agt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EYD00_12570 (recQ)
DNA repair and recombination proteins [BR:
agt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EYD00_12570 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
QBJ14582
LinkDB
All DBs
Position
circular:2521102..2522901
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AA seq
599 aa
AA seq
DB search
MNDDPLQILKTVYGYDSFRGRQAEIIRHVTSGNNAFVLMPTGGGKSLCYQIPVLARKGMG
LIVSPLIALMVDQVAALRQAGVRAEALNSDLSPEERRALWQAMRSGNVDILYAAPETLLK
PEVLEALQSIDLSLIAVDEAHCLSQWGHDFRPPYRQLDLLIERFPNTPRMALTATADEPT
RAEILGHLDIKEDDAFIAGFDRPNIRYAIMEKDNPRAQLRRFLKDREDQSGIVYCLSKRK
VEETAAWLREEGRDALPYHAGMDKAAREENQTRFQHGEAVIIVATVAFGMGIDKPDVRFV
VHIDLPGSIEAYYQETGRAGRDGLPSDVLMLYGYEDIALRNRFIEESDAADQRKHMERQK
LDALLGLAETASCRRQILLSYFGDRCEPCGNCDTCAEPPDLFDGAIAAQKLLSCIYRTGE
RFGQAYVIRVLLGLEDERISRFGHDRITTYGIGKEHDNRTWRAILRQLVALRLIDVDLSG
HGGLSISADGRQFLREKPSLMLRIPSAPRQQAPRNAASAALPDADRGLFEVLRAKRMEIA
RAQNVPPYVIFHDKTLIELAAAKPVSVKEMAQIPGVGDTKLERYGPAFLEAIMQHAASD
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgacgatccgttgcaaatcctcaagaccgtttacggctatgacagcttccgtggg
cgacaggcggaaatcattcggcatgtcacgtccggaaacaacgccttcgtgctgatgccg
acgggtggcggaaagtcactgtgttaccagattccggtgctcgcccgcaaaggcatgggg
ctgatcgtctcgccgctgatcgcgttgatggtcgatcaggtggcggcgcttcggcaggcc
ggcgtgcgggccgaggcactcaactccgacctttcgccagaagagcggcgggcgctctgg
caggccatgcgctccggaaatgtcgatattctctatgctgcgccggaaacccttctcaaa
ccggaagttctcgaggcacttcaatccattgatctgtcgctgatcgctgtcgatgaggct
cactgcctttcgcaatgggggcacgacttccgtccgccctatcgccaactcgatctgctt
atcgagcgttttccgaatacgccgcgcatggcgctgacggcaacagccgacgaacctacc
cgcgccgaaatcctcggccatctggatatcaaagaggacgatgccttcatcgcgggtttc
gatcgtcccaatatccgctacgcgatcatggaaaaggataatccccgcgctcagctcaga
cgttttctgaaagaccgggaagaccaaagcggcatcgtttactgcctgtcgaaacgcaag
gtcgaggaaacggccgcctggctgcgcgaagaaggacgtgacgcactgccttatcatgcc
ggcatggacaaagccgcgcgggaggagaaccagacccgtttccagcacggcgaagccgtc
atcatcgtcgcgacggttgccttcggcatgggcatcgacaaaccggacgtacgttttgtc
gtccatattgatctgcccggcagcattgaagcctattatcaggagaccggccgcgcaggc
cgtgatggtctcccgtccgacgtgctcatgctctacggttatgaagacattgcgttgcgt
aatcgtttcatcgaggaatcggacgccgcggatcagcgcaaacatatggagcggcagaag
ctcgacgcgctgctcggtcttgcggagacggcaagctgccgcaggcagatattgctttcc
tatttcggcgacagatgcgagccatgcggcaattgcgatacatgcgcggagccgccggat
ctgttcgacggcgccatagccgcccaaaaactgctttcctgtatttaccgcaccggagaa
agattcggacaagcctatgtcatccgcgtcctgctgggcctcgaagacgaaaggatttcc
cgattcgggcatgatcgcataaccacttatggcatcggtaaggagcacgacaatcgcacc
tggcgcgccattcttcgccagctggtcgcgttgcgactaattgatgtcgatttgtccgga
cacggcggattgtccatttccgccgacgggaggcagttcctgcgtgaaaaaccgtcgctg
atgctgagaataccatctgcgccccggcagcaggcgccgcgaaacgccgcatctgccgcc
ctgccagacgctgaccgcggcctcttcgaggttctgcgcgcaaaacgcatggaaatcgcc
cgcgcacagaacgttccgccttatgtgatttttcacgataagacgctcatcgagcttgcc
gccgcaaaaccggtctccgtgaaggagatggcgcagattccaggcgtgggggataccaaa
ctggaacgttacggtccggcctttcttgaggcgatcatgcagcatgccgccagcgactga
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