Actinoalloteichus hoggarensis: AHOG_12440
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Entry
AHOG_12440 CDS
T04975
Symbol
ykoU1
Name
(GenBank) putative ATP-dependent DNA ligase YkoU
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ahg
Actinoalloteichus hoggarensis
Pathway
ahg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ahg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AHOG_12440 (ykoU1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ahg03400
]
AHOG_12440 (ykoU1)
Enzymes [BR:
ahg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AHOG_12440 (ykoU1)
DNA repair and recombination proteins [BR:
ahg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AHOG_12440 (ykoU1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ASO20131
UniProt:
A0A221W3C1
LinkDB
All DBs
Position
complement(2838343..2839257)
Genome browser
AA seq
304 aa
AA seq
DB search
MTRRERVEIDGRTLTLSNPTKVLYPATDERAEITKGEIVDYYRAVAATALPHLRNRLLTL
RRYPEGIESPGFFQKDSGGRLPSWVHTVSVPHRHRAGSVRHVVCEDESTLVYLANLASLE
LHIRLCPADRPDHPDRFVVDLDPPPGHDPKELRPLVRRVSERFEETGLTPYVQTTGGKGF
HVMAPLVPDCPVDEVLAAAREMAARLAEEDRRFTVEQRRDRRNGRVLLDVNRNGHAQTVI
APYSTRARPGAPVATPIEPHELARVRPDAYHVDNVPRRLASKGDPWSDLERHAVSAAELH
ARLS
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atgacccgccgagagcgtgtcgagatcgacggcaggacgctgacgctgtcgaatccgacg
aaggtcctctacccggcgacggacgagcgtgccgagatcaccaagggcgagatcgtcgac
tactaccgtgccgtcgccgccacggcgctgccccatctgcgtaacaggctgctgacgctg
cgccgctatcccgagggcatcgagtcgccgggcttcttccagaaggactcgggcggacgg
ctgccctcctgggtgcacaccgtgtcggtccctcatcggcaccgggcgggctcggtccgc
cacgtcgtctgtgaggacgagtcgacgctggtgtacctggccaacctcgccagcctggag
ctgcacatccggctgtgccccgccgatcggccggaccacccggaccggttcgtggtggat
ctcgacccgccgcccggtcacgatccgaaggagctcaggccgctggtccggcgcgtgagc
gagcggttcgaggagaccggcctgacgccgtacgtgcagaccaccggcggcaaggggttc
cacgtgatggccccgctcgtgccggactgcccggtggacgaggtgctggccgccgcccgc
gagatggcggctcgcctggccgaggaggaccgacgcttcaccgtcgagcagcggcgggac
cggcggaacggccgggtgctgctcgacgtgaaccgcaacggccacgcgcagacggtgatc
gcaccgtactcgacgcgggccagaccgggtgcgcccgtggcgacgccgatcgagccgcat
gaactggccagggtccgacccgacgcctatcacgtcgacaacgtgccgcgtcggctggcg
tccaagggagacccctggtcggacctggaacggcacgcggtctccgccgccgagctccac
gcccgactgagttga
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