Actinoalloteichus hymeniacidonis: TL08_12295
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Entry
TL08_12295 CDS
T04472
Name
(GenBank) DNA ligase D, polymerase domain
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ahm
Actinoalloteichus hymeniacidonis
Pathway
ahm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ahm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TL08_12295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ahm03400
]
TL08_12295
Enzymes [BR:
ahm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TL08_12295
DNA repair and recombination proteins [BR:
ahm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
TL08_12295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AOS63273
LinkDB
All DBs
Position
complement(2667948..2668865)
Genome browser
AA seq
305 aa
AA seq
DB search
MAAHEQVEIDHRVLTLSNPAKVLYPATEDRAEINKRQVIDYYRSVADVLLPQLHGRLLTM
RRYPDGIESAGFFQKDAGGRLPSWVHTVSVAHRRRGGSTNHVVCEDESTLVYLANLASLE
LHIRLCPADRPEYPDRFVVDLDPPPGVGTRELRPLVRAVAERFDELGLTPFLQTTGGKGF
HVVAPLIPDCHVDDVLASARRMASDLAAAEPRFTVEQRRDKRGGRVLLDVNRNGHAQTVI
APYSLRARAGAPAAAPITAKELSRAQPAGFHLGNLPRRIAAKGDPWAEMDRHATSATRLH
ELLGG
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atggcagcccatgagcaggtcgagatcgaccaccgggtgctgacgctgtccaatccggcg
aaggtgctctatcccgccaccgaggaccgcgccgagatcaacaagcgtcaggtgatcgac
tactaccggtcggtcgccgatgtgctgttgccgcagctgcacggacggctgctgaccatg
cgccgctaccccgacggcatcgagtcggccgggttcttccagaaggacgcgggcggcagg
ctgccctcgtgggtgcacacggtgtcagtcgcgcaccgccgcaggggcgggtcgacgaac
catgtggtgtgcgaggacgagtccaccctggtctacctggccaatctggcgagcctggaa
ctgcacatccggctctgtccggccgaccgccccgaatacccggaccgtttcgtggtggac
ctggacccaccgcccggcgtcggcacccgcgagcttcgcccgctggtgcgggcggtcgcc
gagcgcttcgacgaactcggcctgaccccgttcctccagacgaccggcggcaagggcttc
cacgtggtggcaccgctgatcccggactgtcacgtggacgacgttttggcctcggcccgc
cggatggccagcgatctcgcggcggcggaaccccgattcaccgtggagcaacgccgggac
aagcgcggcggacgagtactgctcgacgtcaatcgcaacggccatgctcagacggtgatc
gcgccctactcgctgcgggcacgggcgggagccccggcggcggcaccgatcacggcgaag
gaactctccagggcccagcctgcgggcttccatctcggcaacctgccgcgtcggatcgcc
gcgaagggcgatccctgggccgagatggaccggcacgcgacctcggcgacgcgcctccac
gaactgctgggcggctga
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