Actinobacillus indolicus: EXH44_03620
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Entry
EXH44_03620 CDS
T05940
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aio
Actinobacillus indolicus
Pathway
aio03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EXH44_03620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aio03400
]
EXH44_03620
Enzymes [BR:
aio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EXH44_03620
DNA repair and recombination proteins [BR:
aio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EXH44_03620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QBQ63383
UniProt:
A0A4P7CEL6
LinkDB
All DBs
Position
complement(755217..758672)
Genome browser
AA seq
1151 aa
AA seq
DB search
MSFELQFRLPKADSTHQDHQTLGNLIGHSDTLAIVQASQQFQGLTVVVTPDTRTALRLEK
SLPSFTKLPVQLFPDWETLPYDNFSPHQDIISARLSALFQLQQGQKQIFLLPINTLLQKV
CPPNYLANNVLLIKKGDRFSIEKLRLQLENAGYRAVEQVLEYGEYAVRGALLDLYPMGAN
SPYRLDFFDDEIDTIRTFDVDNQRTIEQIDEINLLPAHEFPTDSNGIEYFRGKFREQFGE
IRREPEHIYQQVSKGILNAGIEYWQPLFFEQMASLFDYLPEQTLFITFADIQQKAEQFQQ
DTARRYESRRVDPMRPLLPPEQLWFNIDQINQQLKGYPRLTLTNEKVRSSAAKLNANLEP
LPDIAVQSNQKEPFVSFLQFQQTFKGQILFSVETEGRRETLLELLAPLNIKPKQVKQLAE
INSPISLLISPLDQGFIIETSGQKLAIICETDLLGEKVQQSRRQEKSRKTVNPDTLIRNL
AELKIGQAVVHLENGVGRYGGLTTLDAGGIKAEYLVLHYANDAKLYVPVASLHLISRYIG
GTDENAPLHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQKGFAFEYDRDAFVQFS
NTFPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVMNHKQVAI
LAPTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKEQKEILAKVADGKVDILVGTHKLL
QEDVQFKDLGLLVIDEEHRFGVRQKERIKQLRANIDILTLTATPIPRTLNMALNGMRDLS
IIASPPARRLSIKTFVRQSDDTVIKEAILREILRGGQVYYLHNDVATIENTAQQLAELVP
EARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIIIERADKFGLA
QLHQLRGRVGRSHHQAYAYMLTPPPKTLTKDAQQRLEAMSSIDNLGAGFVLATHDLEIRG
AGELLGSEQSGQIESLGFSLYMELLENAVKALQEGREPTLDEITQQQVEIELRVPALLPD
DYLPDVNMRLSFYKRIASAESDEALKDLKIELIDRFGLLPEATKNLFQITQLRHLAKGLQ
LKKVDAGINGGYLEFKPTATPDPMKFLKLIQADKNVYKFDGPLKFRFTKPMERAEDRLTF
VSELIEGLMKD
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgaacttcaatttcgtctgccgaaagcggacagcacacatcaagatcatcaa
actttaggtaacttaatcgggcattcggatacccttgcgattgtgcaggcaagccagcaa
tttcaaggcttgacggtggtggttacacctgatacccgtacggcgttgcggttggaaaaa
agtttgccgagctttactaaactgcctgtacagctttttcctgactgggaaaccttgcct
tacgacaatttctcgccacatcaagatattatttccgcccgtttatctgctttatttcag
ttgcaacaagggcagaagcagattttcctgttgccaatcaacaccttattacaaaaagtc
tgtccgccgaattatttggcgaacaacgtattgttgattaaaaaaggcgaccgtttttcg
attgagaaattacgcttacagctggaaaatgccggttatcgagcggtggaacaagtgctg
gaatatggcgaatatgcagtgcgtggggcattgctcgacctttatccgatgggggcaaat
tccccttatcgcttggacttttttgacgatgaaatcgatacgatccgcacctttgatgtg
gataatcaacgtaccattgagcagattgacgaaatcaacttattgccagcccacgagttc
ccgacagatagcaacgggatcgagtattttcgtggcaaattccgtgaacaatttggggaa
atccgccgtgaacctgagcatatttatcagcaggtgagcaagggcattttgaatgcaggg
attgagtactggcaaccgctcttttttgagcaaatggcgagtttgtttgactatctgcct
gaacagacgctgtttattacctttgccgatattcagcaaaaagccgagcaatttcaacag
gatactgcaagacgttatgaaagtcgccgtgtcgatccgatgcgaccgttgctcccacct
gaacagctttggttcaatatcgatcagattaaccaacagctaaaaggctatccacgttta
actttaaccaacgagaaagtacgaagttcggcggcgaagctgaacgccaaccttgagccg
ttgcctgacattgcggtgcaatccaaccaaaaagaaccttttgtctcttttttacagttt
cagcagacattcaaggggcaaattctcttttcggtggaaacggaaggcagacgggaaacc
ttgctggaactacttgcaccgctgaatatcaagccaaagcaagtgaagcaactggctgag
atcaattcgccaatttctttgctaatttcaccgcttgatcaagggtttattattgaaaca
agcggtcaaaaactggcgataatttgcgaaacagatctgttaggcgaaaaggttcagcaa
agtcgccgacaagaaaaaagccgtaaaactgttaatcctgataccttgatccgcaacctt
gccgagctgaaaatcgggcaagcggtggtgcatttggaaaatggggtagggcgttatggc
ggtttaaccacccttgacgcaggcggtattaaggcggaataccttgtattgcattatgcc
aacgatgccaaactttatgtgccggtggcttcgctccatttaattagccgttatatcggt
ggcacggatgaaaatgctccgttgcataagctgggatcggaagcgtgggcgaaaacccgt
cagaaagcggcggagaaaattcgtgatgtggcggcggaattgcttgatgtctatgcgaaa
cgtgaatcgcaaaaaggctttgcgttcgagtacgatcgtgatgcgttcgtgcaatttagc
aacacattcccgtttgaagaaaccgaagatcagaaaacggcgatcaatgcagtgattagc
gatatgtgcttgccgaaagcgatggatcgccttgtgtgtggtgatgtcggctttggtaaa
accgaagtggcaatgcgagctacctttttggcggtgatgaaccataaacaagtggcaatc
cttgccccgacaaccttgttggcacagcaacattttgagaattttaaagatcgttttgct
aattatccgatcaatgtcgaagtgctttcccgttttaaaaccgccaaagagcagaaagaa
attttggcaaaagtggcggacggcaaggtcgatattttggtcggtacgcataaattattg
caagaagatgtgcagttcaaggatcttggcttgctggtgattgacgaagaacaccgtttc
ggcgtgcgtcaaaaagagcgaattaagcaactgcgagctaacattgatattctcacgctc
acggcaacgccaattccaagaacgctcaatatggcgttgaacggaatgcgagatctgtcg
attatcgccagtccgccggctcgccgtttatcgatcaaaacctttgtacgacaaagcgat
gatacggtgatcaaagaagcgattttgcgtgaaattctgcgtggtggacaagtttattat
ctgcataacgatgtagcgaccattgaaaatactgctcaacagcttgccgaactcgtgccg
gaagcccgcattgtgatcggacacgggcagatgcgagagcgtgagttggaacgggtaatg
tctgatttttaccaccaacgctttaacctgttggtttgctcaaccattattgaaaccggg
attgacgtgccgaccgccaataccattattattgagcgagcggataaattcggcttggca
cagctacaccaactgcgtgggcgtgtcggacgctcgcaccaccaagcctatgcctatatg
ctaaccccaccgccaaaaacgctaactaaagacgctcaacaacggcttgaagcgatgagt
agcattgataaccttggggcaggctttgtgctggcgacccacgatcttgaaattcgtgga
gcgggtgaactgctggggagcgaacagagcggacagattgagagcttaggcttctccctc
tatatggaactgcttgaaaatgcggtcaaagccttacaagaagggcgtgaaccaacttta
gatgaaattacccaacagcaagtggagattgaattacgcgtgcctgcgttactgcctgat
gattatctgccagatgtgaatatgcgtttgtcgttctataaacggattgccagtgcagag
agtgacgaagccttaaaagatctgaaaattgagctgattgaccgtttcggtttactgcct
gaagccacgaaaaacctgttccaaattacccagttacgccatttggcaaaagggttgcag
ttgaaaaaagtcgatgcagggatcaacggcggttatcttgagtttaaaccaaccgcaacg
cctgatccgatgaagtttttaaaactgatccaagcggataaaaatgtctataaatttgac
ggcccgttgaagttccgctttaccaagccaatggaacgggcggaagatcgtttgacgttt
gtgtcagagttgatcgaaggtttaatgaaagattaa
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