KEGG   Arachis ipaensis: 107629273Help
Entry
107629273         CDS       T04301                                 

Definition
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
aip  Arachis ipaensis
Pathway
aip03030  DNA replication
aip03410  Base excision repair
aip03420  Nucleotide excision repair
aip03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:aip00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    107629273
   03410 Base excision repair
    107629273
   03420 Nucleotide excision repair
    107629273
   03430 Mismatch repair
    107629273
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:aip03032]
    107629273
   03400 DNA repair and recombination proteins [BR:aip03400]
    107629273
Enzymes [BR:aip01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     107629273
    6.5.1.6  DNA ligase (ATP or NAD+)
     107629273
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     107629273
DNA replication proteins [BR:aip03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    107629273
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     107629273
DNA repair and recombination proteins [BR:aip03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     107629273
   NER (nucleotide excision repair)
    Other NER factors
     107629273
   MMR (mismatch excision repair)
    Other MMR factors
     107629273
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DUF4820
Motif
Other DBs
NCBI-GeneID: 107629273
NCBI-ProteinID: XP_016187505
LinkDB All DBs
Position
B03
AA seq 849 aa AA seqDB search
MLAFRPCFFNPPLCRPISVKVLSFFAFPSSHILSLPFPHRTMTKPPSAFDALMSGARAAA
AAAAKKKKAEQSQQPTVSSPKKRKPSSSTLPTPTSTLNPNDPKPSETVPTPTSDPPKQEP
EKEGPPPTKTRHVSSSSALQELKKRIPQLKAKPSKFDPSSVACWEKGTPVPFSLLALALD
MISMEPGRIKMTDIVCNLMKTVIYSTPEDLVPLIYLFAKRVAPAHEGLELGIGETSIIRA
LAEATGSTESKIKTQYQKVGDLGKVAKECRSSQSMMRKPEALTIRKVFNTFRLIAKESGR
DSQKKKKNHIKALLVAATDCEPQYLICFLQGKLRIGVAEQTLLAALGQAAVQSEEHSKPP
AGIKSPLEEAVKIVKQVYSVLPVYDEIVSALLTHGVWKLPSICNFTPGIPVGPMLSKPTK
GISDILNSLQDVEFTCEYKYDGERAQVHYMENGSVEIYSRNAERNTGKFPDVVAAISRLK
KSTVSSFVLDCEIVGYDREKQTIRSFQDLATRPRKNVSVDNIKVDVCIFAFDILYLNGRV
LLQDNLKIRREHLYASFEEETGVFQYATAITSNDIEEIQKFLDKAVGSSCEGLIIKTLND
DSTYEPSNRSHNWLKLKKDYLDNIGDSLDLVPIAAFYGRGKRTGVYGAFLLACYDYNNEE
FQSICKIGTGFTEDVLEQRSKSLGSEVIPGPKPYYRYGDTMKMPDVWFEASEVWEVKAAD
LTISPVYRAAVGIVDSDKGISLRFPRLVRVRPDKTPEQASSSEQVAEMYNAQKATQTKEK
EKNKNKQDGSESPKREIGSESPKKQIGSEDKDEVADEDEDEDEDEDVDVDVDVDVDVDVD
VDADEDEDK
NT seq 2550 nt NT seq  +upstreamnt  +downstreamnt
atgctcgcattccggccatgcttcttcaacccaccactctgccgccccatttccgttaaa
gttctctcctttttcgcatttccttcttctcacattctctctctccctttcccccatcgc
acaatgaccaaaccaccctccgccttcgacgctctcatgtccggtgctcgcgccgccgcc
gccgccgctgccaagaagaagaaagccgagcagtcgcagcaaccaactgtttcttctccc
aagaaacgaaaaccttcatcctccactctccccactccaacctccacgctaaaccctaac
gaccccaaaccctccgaaaccgttcctacgccaacgagtgacccgcccaagcaagaaccg
gagaaagaaggccctcctccgaccaagactcgccacgtgtcttcttcatctgccttgcag
gagctgaagaagcgcattccgcagctgaaggcgaagccttcgaaattcgatcctagctca
gtggcttgttgggagaagggcacgcctgtgccgttctcgttactggcgttggcgcttgac
atgatttctatggagcctggcagaatcaagatgacagatattgtgtgcaatttgatgaag
actgtgatatactctacccctgaggatcttgtgcctctgatttatctcttcgcgaagagg
gttgctccggcgcatgaagggctggaattgggaattggcgagacttcgattattagggca
cttgctgaggcaactggaagtactgaatccaaaatcaagacgcagtatcagaaagtgggt
gatttgggaaaagttgccaaggagtgccgttcatctcagtccatgatgcggaaacctgag
gctctgactattaggaaggttttcaacaccttccgtcttattgccaaggaatctggaaga
gacagtcaaaagaagaaaaagaatcatataaaggcacttcttgttgctgcaactgactgc
gaacctcaatatcttatctgttttctacagggaaaattgcggattggtgtggctgagcaa
actctcttagctgcattaggccaagcagcagtacagagtgaagaacattctaaaccacct
gctggcattaagtctcctttggaagaggctgtaaaaattgttaaacaagtctactctgtt
cttcctgtctacgacgaaatagtatctgcacttcttacgcatggtgtatggaaacttcca
tcaatatgtaattttactcctggtattccagttggacctatgctgtcaaaaccaacgaag
ggtatctctgatattctaaattcattgcaagatgtggagtttacttgtgaatacaagtat
gatggagagcgtgcccaggtacattacatggaaaatggttcagttgagatttatagtaga
aatgctgagcggaatactgggaagtttcctgatgttgttgctgcaatttcaaggttaaag
aaatcaactgtatcatcatttgttcttgattgtgaaattgttggatatgatcgtgagaaa
cagaccatccgttctttccaggatcttgctactcggcctcgtaaaaatgtatctgtggat
aatataaaggttgacgtctgcatatttgcttttgatatactgtatcttaatggccgagta
cttcttcaggataacctgaaaatccgtagagagcatctttatgcctcttttgaagaagaa
actggagtttttcagtatgcaacggcaataacatcaaatgacattgaggaaattcagaaa
tttctcgacaaagctgttgggtcaagctgtgagggattaatcattaaaactttaaatgat
gattctacatatgaaccttccaatcggtcacacaattggctaaaactgaagaaagattat
ctggataacataggggactcgctagatttggtacctatagctgcattctatggacgtggg
aaacgtacaggagtctatggtgcttttcttcttgcttgctatgactacaataacgaagaa
tttcaaagtatttgtaagattggaacgggatttactgaagacgtgctcgaacagcgttct
aaaagtcttggttctgaagtgattcctgggccaaagccatactatcgatatggagataca
atgaagatgcctgatgtctggtttgaagctagtgaggtgtgggaggtgaaagctgcagat
ttgaccattagcccagtttaccgagctgcagtgggcatagtagattcagataagggcata
tctcttagattcccacggctagttcgagttcgacctgacaaaacacccgagcaggcctca
tcatctgagcaggttgctgagatgtataatgctcaaaaagccactcaaactaaagaaaaa
gaaaaaaacaaaaacaaacaggatggtagtgagtcaccaaaaagagagattggcagtgag
tcaccaaaaaaacagattggcagtgaagacaaagacgaagtcgcagatgaagatgaagat
gaagatgaagatgaagatgtagatgtagatgtagatgtagatgtagatgtagatgtagat
gtagatgcagatgaagatgaagataagtga

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