Amphritea japonica: AMJAP_1900
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Entry
AMJAP_1900 CDS
T06992
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ajp
Amphritea japonica
Pathway
ajp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ajp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AMJAP_1900 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ajp03400
]
AMJAP_1900 (recB)
Enzymes [BR:
ajp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AMJAP_1900 (recB)
DNA repair and recombination proteins [BR:
ajp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AMJAP_1900 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
ResIII
AAA_25
Antibiotic_NAT
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BBB26491
UniProt:
A0A7R6SSQ3
LinkDB
All DBs
Position
complement(2129565..2133104)
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AA seq
1179 aa
AA seq
DB search
MSKVQLLDPLSFPLSGRRLIEASAGTGKTYTITALYLRLLLGTAEADSALRVDQILVVTF
TEAATEELRDRIRNRIQEACQVFRGAETKDPFLRQLCEQQSDLSRSAQLLELAGRQMDEA
AIFTIHGFCQRMLRQHAFESGSLFETELVTDAGPLLRQALLDCWRGLIYPAESQLSEAIQ
AIWPGPDSLLAALRPLLGRPGLLLVPALETDNLQQLWQESQNWLTGFREQWLSYVQEQQI
DLADVIQASGVNKNSYRKTSVPKWLAAIDQYARGDTNNVPETEIGKFCQSLLEEKTSAGK
KVPEHPLFELCESYFEHRLPLRELLLTYTLQKVEQRFNKLKQDYRLLSFDDLLSQLDAAL
QGGSSEALVKAINTQFPVAMIDEFQDTDLLQYRIFSTLYPDSPERGLFMIGDPKQAIYGF
RGADIFTYIKARREVAEHYTLGTNWRSSKAMIAGVNTLFGGCDTPFIYNDDIPFLPVTEG
GKADKTPFSLYGRQSASLQFWFCDTPVLSKQDYLQQMADACACDIDTKLAAASEGEALIG
DQRLLAKDIAVLVRNRQEAAAVMGALSDRGVHSVYLSGRDSVFSTREAYDLKLLLLAVAE
PQNESRLRAALATGLMNYPAAWLDRLSIDEQLWEQLVAEFGEYRDAWLDLGVLPMLRRLI
RRRHLAESLQRQVQGERRLTDLLHLGEILQRASMEQEGIAALLRWYSDQLLNPNGESDEQ
RLRLESDSGLVTVITVHKSKGLEYPLVFLPFACTFIKAREPLFHNQQDQLCYHLDSKDSD
SLALAERERLAEDLRLLYVALTRSVYGCYIGLANIADGRSKKSGLHRTALGHLLLNGADS
NAELLSRLSLLSETGLVALSEPPQGEQQRGLFDLPEPRLPEYQARQFKRRLRRDWRISSY
SALVSHHSAAPPLPGLDLEVIDEQDLPVVEQDETVHNIFNFYKGAQAGTFLHELFEEIDF
TDHRNNLTPLLEQKCQVAGYEEYWIPVLEQLLEDVLYTPLLSACPATEKSPCLADISNAK
RLVEMEFMFPSQGLNANKLNQIIKINDPLSKSASDLVFDDLKGMLKGFIDLIFEYQGRYY
ILDYKSNHLGHQPEDYRVEALEAAMLDHRYDLQYQLYTLALHRLLQTRLPGYDYELHFGG
VFYLFLRGMKAESAGSGVFHCRPAIEMVEQLDQLFREGR
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaggtgcagcttcttgaccccctcagttttccgctgtcaggccgtcgtctgatt
gaggccagcgctggtaccggcaagacctatacgattaccgcgctgtatctgcgtttgtta
ttaggcactgctgaggctgactctgccttgcgtgttgatcagattttggttgtgaccttt
accgaggcagcgacagaagagcttcgcgaccgtattagaaacaggatacaggaagcctgt
caggtcttcagaggtgctgagactaaagaccctttcctgcggcagctctgcgaacaacag
agtgatctgtcacgctctgcgcaattgcttgaactggcggggcggcagatggatgaagct
gcgatctttaccatccacggtttttgtcagcggatgttgcgccagcatgcgtttgaaagc
ggcagtctgtttgagacggagttggttactgatgccgggcctctgttgcggcaggccttg
cttgattgttggcggggactcatctatccagcggagagtcagctgagtgaagcgattcag
gcgatctggcccggaccagattcgttgttggctgccctcaggccattgctgggccgccct
ggcttactgcttgtcccagcattagaaaccgataatctgcagcagttatggcaggagagt
cagaactggctgacaggcttccgagagcaatggctgagttacgtacaggaacagcagatt
gacctggcggatgtgattcaggcgtctggagtcaataaaaacagctatcggaaaacctcg
gttcccaaatggctggcagccattgatcagtatgcacgtggggatactaataatgtaccg
gaaactgagattggtaagttttgtcagtcattgttagaggaaaaaacatcggcgggtaaa
aaagtgcccgaacacccgttatttgagctttgtgaaagctatttcgagcatcgattaccc
ctgcgagaattattgctgacttatactctgcaaaaagtagaacagcggttcaacaagctt
aagcaggattaccgtttattatcatttgatgatcttctcagtcaattagacgctgcgttg
caaggtggtagtagcgaagcgttagttaaggcgattaatacgcagtttccggttgcgatg
attgatgagtttcaggatacggatctgctgcaatatcggattttcagtactctctatcca
gatagcccggagcgtggactctttatgatcggcgatcctaagcaggcgatctatggtttt
cggggtgcggatatttttacttatattaaagcacgcagggaagtcgccgaacactatacg
ctaggcaccaactggcgctcatcgaaagcgatgatagcgggggttaatacgctctttggc
ggctgcgatactccgtttatatacaacgatgatattcctttcctgccggtaacggaggga
ggtaaagcagataagaccccattttccctgtatggccgacagtcggcctctctacaattt
tggttttgcgatacgccggtactgagtaagcaggattatcttcagcagatggcagatgct
tgtgcctgtgatattgatactaaactggcagccgcttctgaaggtgaagcactgatcgga
gatcagcggctactggcgaaagatatcgccgtgctggtgcgaaatcgacaggaagctgct
gctgtcatgggggcattgtccgaccgcggtgtacacagcgtttatctcagtggtcgggac
agtgttttcagtacccgggaagcctatgatctgaaactacttttgttggcagtggcagag
ccacagaatgaaagtcgtcttcgagcagcgttagcgaccggattgatgaattatccggca
gcctggttagatcgtttaagtatcgatgagcagctctgggaacagctggtggcggagttt
ggcgaatatcgggatgcatggttagatctgggcgtactgcctatgctgaggcggctgatt
cgacgccgtcatctggcagagtcgttacagcggcaggttcagggggaacggcgcctgaca
gatcttttacatctgggggaaattctgcaacgtgccagtatggaacaagagggtattgcc
gcactcctgcgttggtacagtgatcaattactgaaccctaatggtgagagcgatgaacag
cgtttacgtcttgagagtgattccggtctggtcacggttatcacggtacacaagagtaag
gggctcgagtatccactggtcttcctgccttttgcctgtactttcattaaggctcgtgag
cctctgttccacaatcagcaggatcagctttgttatcacctcgacagcaaagatagcgat
agtcttgcgctggctgagcgggagcgtctggctgaagatctgcgtttactctatgttgcg
ctcacccgttcggtatacggttgttacattggtctggcaaatattgccgatggccggtct
aaaaagagtggcttgcaccggaccgcactgggtcacctgttattgaatggtgcggatagc
aatgcagaattattgagtcgtttaagtcttttatcagagactggcttagtggcgctgtct
gaaccgccacagggcgagcagcagcgaggattgtttgacctgccagagcccaggcttccc
gaataccaagcgcggcagtttaaacggcgcttacgacgagactggcgtatctccagttat
tcggcgcttgttagtcatcacagcgctgcgccaccacttcccgggcttgatctggaagtg
attgatgagcaggatctgccggttgttgagcaggatgaaacggtacacaatattttcaat
ttttataaaggagcccaggcaggtaccttcctgcatgagttgtttgaagagatcgacttc
actgatcaccggaacaaccttactccgctgttagagcagaaatgtcaggttgccggttac
gaagaatactggattccggtactcgaacagttacttgaagacgtgctttacaccccgctg
ttgtcagcctgtccggcaacagaaaagagtccgtgcctggcggatatttcaaatgctaag
agattggttgaaatggaatttatgtttccttctcaagggcttaatgctaataagttaaac
caaattataaagattaacgacccgctgtctaagtcggcaagtgatcttgtgttcgatgat
ttgaagggcatgttgaagggatttatcgatctgatttttgagtatcaggggcgctattac
attctcgattataaatcgaatcacttaggtcatcagccggaagattaccgagtagaggcc
cttgaagcagcgatgttagatcatcgttacgatcttcaataccaactatataccctggcg
ctgcatcgcctgttgcaaacccgcttacccggttacgattacgagttgcatttcggtgga
gtgttttatctcttcttgcgagggatgaaagctgaatctgccgggagtggtgttttccat
tgtcggccagcgatagagatggttgagcaattagatcagttattccgggaggggcgataa
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