Aliiglaciecola sp. LCG003: QR722_02760
Help
Entry
QR722_02760 CDS
T09143
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
alii
Aliiglaciecola sp. LCG003
Brite
KEGG Orthology (KO) [BR:
alii00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alii03019
]
QR722_02760 (hrpB)
Enzymes [BR:
alii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QR722_02760 (hrpB)
Messenger RNA biogenesis [BR:
alii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QR722_02760 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
ResIII
AAA_19
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
WJG09975
LinkDB
All DBs
Position
647287..649761
Genome browser
AA seq
824 aa
AA seq
DB search
MVKYVLPVESCWPALSESISEQDVILVAPPGAGKSTYLPLKLLELFASTNLKIVMLQPRQ
IAVRAIANYLAQQLGEDVGQTVGYRMRGEAKTSSATRLEIVTEGLLTRMLQNDPELPGIG
LVIFDEFHERNVHADFSLALCLDTQAALRPDLRLLVMSATLDVGEIGNLLPDAKLLQSEG
KRFDVDVIYTPAKAGVFLAQHCTAIIIQALQQHEGDMLVFLPGAREIKLVEQLCQVQLQQ
TVNIFPLYGNLNKQQQQAAIQPSPAGQRKIVLATNIAETSLTIDGIKIVVDSGQEKVSSF
NLQRGISSLTTMQISKASATQRAGRAGRLAAGHCYRLWSKDAQQRLIAQRPPEILQMDIS
SLYLEALVWGEPLADLRLLDIPSTAQIQHAEDLLKSLGALDEQGKLTAVGRAFNGLGCHP
RLACMLIQSEALGAASQLLACLLVAVLEGKPISALRDELCLSQHLNYVLSPPQQPIYLEA
KRWASRLRLNWSGAQIKKALPTLVDLLLLGFPDQIGQSRGAGRFLLASGTGVMFHARQQH
SNLMVSPWLIVCQMTLGRDADGLIQLAEPISESQLMGHADNLIKHSTQHYWDDTNQRVVS
REVKMLGAILVSETRLAKTKNADYSEIIIDTLLTKGFGILNWSTSVQQLLLRVNLAAEVF
GSSWPDFTPAGLRADLSEWLSPYLAGVSSLEQLIKLDWHSILKNQLEWSQQQFLDQHFPT
QMQVATGQSCRLHYSKNGQVELQTKMQQVYGWQDSPSIAQGRVKVTLSLLSPPGTELQKT
SDLAGFWQGSYKEVQKEMKGRYPKHFWPDDPANARPTSKTKKYM
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
ttggttaaatacgtgttaccagttgaatcttgttggccagcgctgtcggagtcaatctct
gagcaggacgtgattttagtcgctccaccgggcgccggtaaatcaacctacttgcccctt
aagttattagagttgtttgcgtcaactaatctgaaaatagtgatgctgcaacctcgtcaa
attgccgtgcgggccattgctaactatttggcgcaacaattaggcgaagacgttggacaa
acggttggttatcgcatgcgcggcgaagctaaaactagttcagccactcgattagaaatc
gtcactgaaggtttgcttacccgcatgttgcaaaacgaccctgagctaccggggattggc
ctagtgatttttgatgaatttcacgagcgcaatgtacatgccgacttttccttagcgtta
tgtttagacactcaagcggcattgagaccggatttaagattgctagtgatgtcggccact
ttagatgtgggagagataggcaatctgttacccgatgctaaattattgcaaagtgaaggt
aagcgctttgatgttgatgtaatttatacaccggccaaagcaggtgtttttcttgctcag
cattgcacagcaattattatccaagcactgcaacaacacgagggtgatatgttggtgttc
ttgcccggcgccagagagattaaattggtcgagcaattgtgtcaggttcagttacaacag
actgtcaatatttttccattgtacggaaatctgaataaacagcagcaacaggccgccata
cagccctcccccgcagggcaacgcaagatagtattagcaaccaatattgccgagacgagt
ttgaccatcgatgggattaaaattgtggtggactctggtcaggaaaaggtctccagcttt
aatctgcaaaggggaataagcagcttaaccactatgcagatatcaaaggcatcagcgaca
caacgagcagggcgggctggccgtctagcggctgggcactgttatcggttatggtctaaa
gatgctcaacagcggttaatcgcacagcggcctccagagatattacagatggatatttcc
tcgctgtatttggaggcactagtttggggggagccgctggctgatttacgtttactggat
ataccttctactgcgcagattcaacatgcggaagatttattgaagtcgttaggtgcctta
gatgaacaaggaaagttaaccgcagtaggtcgtgcttttaatggcttaggttgccatcca
cggctagcctgtatgttgatccaaagtgaagcattgggcgcggcatcacaattattagcc
tgtttgctggtggcggttctggaaggcaaacccatatctgcattacgagatgaattatgc
ctaagtcagcacctcaattatgtattatcgccgccgcaacagcctatttatctcgaagcc
aagcgttgggcgtctcgtctaaggctgaattggtcaggcgcgcaaataaaaaaagcgcta
ccaactttagttgatttactgttactaggcttccctgatcaaatagggcagtcacgcgga
gctggtcgttttttactggccagtggcacgggtgtgatgtttcatgcccgacaacagcac
agcaatttaatggtcagcccatggctgatagtttgccaaatgacgttaggccgtgacgcc
gatggccttatccaattagcggagcctatcagcgaaagtcaattgatgggccatgctgat
aatttaatcaagcattcaactcagcattattgggatgatacgaatcagcgagttgtgagt
cgggaagtgaaaatgttgggggctattctagtttctgaaactaggctggcgaaaaccaag
aatgctgactacagcgaaattatcatcgacacattgctgacaaaagggttcgggatcctc
aattggtcgacgtcagtccagcaattattactgcgagtaaatttggccgctgaggtattt
ggttcgagttggcccgattttacaccagcgggtttacgggcagatctcagtgaatggctt
agtccttatttggccggggtatcgagtttggagcagttgatcaaattagattggcatagc
atcctcaaaaaccagttggagtggagccagcagcagtttttagatcaacactttccaaca
cagatgcaggtcgcgaccgggcaatcatgtaggttacattatagcaaaaatggtcaggta
gaattacaaactaaaatgcagcaagtgtatgggtggcaggattcacctagcatcgcccaa
gggcgtgtaaaagtgaccttatcgctattgtcaccaccaggcacagagctgcaaaaaact
agcgatttggctggtttctggcaaggaagctacaaagaggtgcaaaaagagatgaaaggt
cgctacccaaagcatttttggccagatgatcctgctaacgctcgccctaccagcaaaacc
aaaaagtatatgtaa
DBGET
integrated database retrieval system
