Austrofundulus limnaeus (annual killifish): 106536997
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Entry
106536997 CDS
T06063
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106536997
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alim03019
]
106536997
Messenger RNA biogenesis [BR:
alim03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
106536997
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
106536997
NCBI-ProteinID:
XP_013889815
UniProt:
A0A2I4DC61
LinkDB
All DBs
Position
Unknown
AA seq
537 aa
AA seq
DB search
MSAEEADKTTTTDASAGDEEEEWLYGDESESKEEDEEAKLNAAVGTPANISTDEATVEAA
QTTGNGVASEATGEAAGEDGDSDSDSDDDDDDVRVTIGDIKTGAPQYTTYGAPPVNLNIK
STSSRPYGQVTKLKGVDLEAPGSINGVPVLEVDMESFEEKPWRKPGADLSDYFNYGFNED
SWKAYCEKQKRLRMGLEISTVGSVTSKITVQQGRTGNEKDTSSLSLHSSKPDFPSPVSLY
KSTLNQVNRKPIGTIDVIGAQTTTISRVEGRRRHNLEGNNIQVISEHSTTDPEPAPAKIP
TFFTPGPIPPNIPPPPFLPPPPNVSTAPLIPPPRLPITVPPPGFPPPTSGPPPSLIPTMD
SHAGGYDGRSVPPFAFPQGAYPPPMPGGVPPWPPMVDNTKPWDFYPRRDDKRDKERERPR
ERTHEREREREHSPSAMSYNSDEERYRYREYSERNYVERHRDRSSREKEERHRERRHREK
EEGRHKSSRSSSSRRRHDSEEGDSHRRHKHKKSKRSKEGKEASDDLGADQENQEAME
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggaggaagcggataaaaccacgaccactgatgccagcgccggcgatgaggag
gaggaatggttgtatggagatgaatcagaaagtaaagaagaggatgaagaagccaaattg
aatgctgctgtcggtacacctgctaacatatcaacagatgaggcgactgttgaagctgca
cagaccacagggaatggagtggcctctgaggccacaggtgaagctgcaggtgaggatggg
gacagcgacagcgacagtgatgatgacgacgacgatgtccgtgttaccattggcgacatc
aaaactggagcgcctcaatacacgacatatggagccccacctgttaacctcaacataaaa
tcaactagctccaggccatacggacaagtgacaaagctgaagggagtggatctggaggct
ccaggaagcataaatggcgttcctgttctggaggtggacatggagtcctttgaagagaaa
ccttggagaaagccaggtgcggatctgtcggattatttcaactatggctttaacgaggac
tcatggaaagcttattgtgagaagcagaagaggctgcgaatgggtctggagatctctaca
gttggctcagtgaccagcaagatcacagtgcagcagggcaggacggggaatgaaaaggac
acgtccagtttgtcccttcattcgtccaagccagacttcccctcccctgtcagcctctac
aagtcaacactcaatcaggtcaacaggaaaccgattggaaccatagatgtgatcggtgcg
cagacgaccacaatcagcagggtagaggggcgacgccgacacaatctggagggcaacaat
atccaggtgatttctgagcactcgacaacagaccctgaaccagctccagctaagattcca
accttcttcactcctgggccaattcctccaaacatccccccgcctccatttctgccccca
ccaccaaacgtcagcaccgcacctctcatacctccaccgaggttgcctatcactgtccct
cctcctggttttcctccaccaacaagtggcccccctccttctttaatccccactatggac
agccatgccggaggctacgatggccgctctgtccctccgtttgcatttccccaaggtgct
tatcctccacccatgcctggaggtgttcctccttggccccccatggtggacaacaccaag
ccctgggacttctatcctcgtcgagatgacaagagggacaaggaaagagagagaccccga
gagaggacacatgagcgagagcgggagagagagcacagcccttcagctatgagctacaac
agtgatgaggagcgctaccgttaccgtgagtactcggagcgcaattacgtggagcgccac
cgcgaccggtccagccgagagaaagaggagcggcacagagagaggcggcacagagaaaag
gaggagggacgccacaagtcctcccgcagtagcagtagtcggaggaggcacgacagcgag
gagggggacagccaccggaggcacaaacacaagaagagtaagcggagcaaggagggcaaa
gaggccagtgatgatctcggtgctgaccaggagaaccaggaggccatggagtag
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