Algoriphagus sanaruensis: AO498_03295
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Entry
AO498_03295 CDS
T04334
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
alm
Algoriphagus sanaruensis
Pathway
alm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
alm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AO498_03295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alm03400
]
AO498_03295
Enzymes [BR:
alm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AO498_03295
DNA repair and recombination proteins [BR:
alm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AO498_03295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AMQ55409
UniProt:
A0A142EJV4
LinkDB
All DBs
Position
complement(747307..750657)
Genome browser
AA seq
1116 aa
AA seq
DB search
MDRIALLHIYQSDPIFQTLSLQLNQANGENLAIKGLSGSLDMVLFCSLFEKFGGTHLIIA
QDREEAAYLNSDIQNLLGTEEYLIFPGSYKRPYQYDEIDNANILIRAEMLNRLVEQKNKP
LIVITYPEALYEKVINKRSLVENTFSAKVGESVDMEFVSELLSSYDFERTDFVYEPGQFA
IRGGILDVFSYSHEHPYRLELFGKEIESIRTFDPESQLSIATVDEISLVPNVQTKLLKEE
RKSLLSFLPSEAKIWIKDYQLTLDVMDECFHKAQQAFDQIVKQTQTEKLLLQPEHLFDSG
IVFAKELKSARIIEFGRQFYLKNTVKISWDSQPQPSFNKNFDLLVENLSSNEKQGITNLV
TAENEKQIDRLLGIFQELDPTLQVQTLRIGLREGFVDRNLKLACYTDHQLFERFHRYKTR
TKASKSKALTIKELKSLHPGDYIVHVDYGVGRFAGLEKVDVGGKMQEAVRLIFRDDDLLY
VNIHALHKISKYSGQEGQVPSMSKLGSPDWENKKSRVKKQVKDIAKDLIALYAKRRGAPG
FAFSPDSVLQVELESSFIYEDTPDQASSTSDVKSDMEKSYPMDRLVCGDVGFGKTEVAVR
AAFKAVNDRKQVAVLVPTTILAMQHYQTFKERLSNFPVKVDYINRFRSAKDLKIIKEQVK
SGEIDILVGTHKIVGKDLEFKDLGLLIIDEEQKFGVKVKDQLKNIRVNVDVLTLTATPIP
RTLHFSLMGARDLSVISTPPPNRQPVTTEVQTFQEEVIRDAVAYELRRGGQVFFVHNRVG
EIDSIANLIKKLVPDSRVIGAHGQMDGKKLENIMVDFINHEYDVLVSTNIIESGLDIPNA
NTIIINRAHMFGLSDLHQMRGRVGRSNKKAFCYLLTPPMSGLTPEARKRLQTLEEFSDLG
DGFKVAMKDLDIRGAGNLLGAEQSGFITDLGFEMYHKILDEAVQELKETEFAALFETDLK
EKVKVLVQDCTIETDLELLIPEEYVSNISERLGLYSKLDSIKNEEELAKFSQMLQDRFGP
IPKTVEDLMETVRLRWVAETLGIEKLVLKNKQMKCYLLPSNRDDFYSSPVFGQIMKFAQV
HPKTCKIKEHKNRLILTVEEVQRIQKAQKLLEEMKN
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
ttggacagaattgctcttctacatatttaccaatctgatcctatcttccagactttatct
ctccagctcaatcaggcaaatggggagaatctagccatcaaaggcctttctgggagcttg
gacatggtcttgttttgctccttgtttgaaaaattcggaggtacacatctgattatcgcc
caagatcgggaagaggctgcctatctcaattcagacattcaaaaccttctgggcaccgag
gaatatttgatctttccgggtagctacaagcgaccttatcaatatgatgaaatcgataat
gcgaacatcctcatacgagcagaaatgctcaatcgattggtagaacaaaaaaataagccg
cttatcgtcatcacctatccggaggccctgtacgaaaaagtaatcaacaaaaggtctttg
gtcgaaaataccttcagtgccaaagttggggaatcagtggatatggaattcgtgtccgaa
ttgctgagtagctacgattttgagcgaacagatttcgtctacgagcccggacaatttgcc
attcgaggagggattctggatgtattttcttacagtcatgagcatccttatcgcctggaa
ttatttggaaaagagattgaaagcatccggacatttgatccggaaagtcagctctccatt
gctacagttgatgaaatttcattagttccgaacgtacaaaccaagcttttgaaagaggag
cgtaaatcgctattaagctttcttccttccgaagcgaaaatttggatcaaagactatcag
ctcaccttggatgtgatggatgaatgcttccacaaggcgcagcaagcctttgatcaaatc
gtcaaacagactcaaacggaaaagcttttattacaacctgagcacctatttgacagtggg
atagtgtttgcaaaggagctgaaatctgccaggatcatcgaatttggaagacaattttac
ctcaaaaacacggtaaaaatctcctgggatagccagccacaaccttctttcaataagaac
tttgatcttttggtcgaaaacctttcttccaacgagaagcaaggaattaccaatttggtt
acggctgaaaatgaaaagcaaatcgaccgccttctgggaatattccaagaactagatcca
acccttcaagtacaaacactccgaattggcttacgggaaggatttgtggatcgcaatctg
aaacttgcctgctataccgatcaccagctttttgagcgatttcatcgttacaaaacccgc
acgaaggcaagtaaatctaaagccctaaccattaaagaactgaagtcacttcaccctggg
gattacattgtccacgtggattatggagtgggtagatttgctggtctcgaaaaagtcgat
gtgggaggcaaaatgcaggaagctgtgcgactcatctttcgagacgatgatcttttatac
gtcaacattcacgccctccacaagatctccaaatactctggacaggaaggacaagttcca
tcgatgtctaaattgggatcgcctgattgggaaaacaaaaagtcgagggtaaaaaaacaa
gtcaaagacattgccaaggacttgatcgctttgtatgcaaaacgaagaggagctcctgga
tttgcattttccccagactcagttttacaagtggaattagaatcttcttttatctatgaa
gatacccctgaccaagcatcctccacatcagatgtcaaatccgatatggaaaaaagttat
cccatggaccgcttggtttgtggagatgtaggttttgggaagactgaagtagcggtaaga
gccgcattcaaagcagtcaatgaccggaaacaagtggcagtcttggtgcctaccaccatt
ttggccatgcaacactatcagacctttaaggaaaggctaagtaattttccagtaaaggtg
gattatatcaaccgcttccgttctgccaaagatttgaaaatcatcaaagagcaggtgaaa
agcggggaaattgacattctggtagggacacacaagattgttggcaaagaccttgaattc
aaagatttaggacttttgatcatagacgaagagcagaaatttggcgttaaggtcaaggat
caattaaaaaacattcgggtgaatgtggatgtcttgacccttacagcgactcctattcct
cgtacacttcacttctcactgatgggagctagagacttgtccgtcatttctactccgcct
cctaacagacagccagtaactactgaagtacaaactttccaagaagaagtgatcagagac
gcagtggcttatgaactccgaagaggaggtcaagttttctttgtccataaccgagtgggt
gaaattgacagcattgcaaatttgatcaaaaagctcgtgcctgattcccgtgtaatcggc
gcacatggacaaatggacggcaaaaagctggaaaacatcatggttgacttcatcaatcac
gaatacgatgtgctcgtctccaccaatatcatcgaatcaggtctcgatatccccaatgcc
aataccatcatcatcaaccgtgcgcacatgtttggcttgagtgatcttcatcaaatgcga
ggccgagtgggacgaagtaacaagaaggcattttgctacttactcactcctcctatgtct
ggcttgactccagaagctagaaaaaggctacaaactttagaagaattctctgacttagga
gatggatttaaagtagcgatgaaagatctagacattcggggtgcaggaaatcttttgggt
gcggagcaaagcggttttataacagatcttggatttgagatgtaccataaaatcttggat
gaggctgttcaagaacttaaggaaactgaatttgcagccctttttgaaacagatctgaaa
gaaaaagtaaaggttttagtccaagattgtaccatagaaaccgacttggaattgttaatt
ccagaggaatatgtttccaatatcagcgagcgattaggcctttattccaagctggacagc
attaaaaacgaggaggaattggctaaattctctcaaatgcttcaagatcgatttggtcca
attcccaagacagtggaagacttaatggagactgttcgtttacgttgggtcgcagaaaca
cttggaattgagaagcttgtgttgaaaaacaagcagatgaagtgctaccttttaccttcc
aatagagatgatttctattcttccccagtattcgggcagattatgaagtttgctcaagtc
catcctaagacctgcaaaataaaagagcacaagaatcgtttaattctgacagtcgaggaa
gtccaacgcattcaaaaggctcaaaaattgctcgaagagatgaaaaattga
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