Alcanivorax sp. NBRC 101098: AS19_17510
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Entry
AS19_17510 CDS
T03879
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aln
Alcanivorax sp. NBRC 101098
Pathway
aln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AS19_17510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aln03019
]
AS19_17510
03009 Ribosome biogenesis [BR:
aln03009
]
AS19_17510
Enzymes [BR:
aln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AS19_17510
Messenger RNA biogenesis [BR:
aln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AS19_17510
Ribosome biogenesis [BR:
aln03009
]
Prokaryotic type
rRNA helicases
AS19_17510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
BAP14602
LinkDB
All DBs
Position
1924914..1926569
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AA seq
551 aa
AA seq
DB search
MSDSRSGFASLGLPEVLLTAIARQGFEQPSPIQAQAIPLLLDGHDLLGQAQTGTGKTAAF
ALPLLARLDPSLREPQMLILAPTRELAIQVATACEEFAKDIKGLQVLPIYGGGEYRTQLK
GLRGGAQVIVGTPGRVMDHMDRGSMKLNNLKALVLDEADEMLRMGFIDDVKWVLERTPDD
CQLALFSATMPPVIRKVADQHLKQPKLVRIDNGGATTGTTIRQRYWPVAGLNKLDAVCRI
LEAEEHDAVLVFVRTKQATLELAEQLNRRGLRAEALNGDIPQQQREKTVQRLKDKRFDLL
IATDVVARGLDVPRITHVVNYDMPGDPEAYVHRIGRTGRAGRQGDAILFVARREQHVLRQ
IERITRQSIEKMALPSVDDLNAKRIARFQEQLAGFTSGANVDEARALVNQLRDAMDISDN
DMAAALATMMFKREPLILKEPKMVKEPRRRESAHVGGRREDRNPRNRGDKGRTDKTMRRY
RIKVGHDHGVKPGNIVGAIANEAKLPSRLIGPIKIHQDHSTVELPEDLSPKQLHVIRTAR
VCQQALDLEMV
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgtcagattcccgttccgggttcgcctctttaggcctgcccgaggttctgctcactgcg
atcgcccgtcagggcttcgagcagccttcgccgattcaggcgcaagccatcccgctgttg
ctggatggacacgatcttctgggccaggcacaaaccggcacaggtaaaacggctgcgttt
gcattgccccttttggcccgtctcgatccgtctctgcgtgaaccgcagatgctgatcctg
gccccaacccgcgagctggctattcaggttgccactgcgtgtgaagaatttgccaaagac
attaaaggtctgcaggttctgcccatttacggcggtggagaataccgcacccagctgaaa
ggcctgcgcggcggcgcccaggtgattgtcggcacccccggccgcgttatggatcacatg
gaccgcggctccatgaagctaaacaatctgaaggctctggtgctcgacgaagccgatgaa
atgcttcgtatgggcttcatcgacgatgtgaaatgggtacttgagcgtactccggatgac
tgccagctggcgctattctccgccaccatgccgccggtcattcgcaaggttgccgaccag
cacctcaaacaacccaaactggttcgcattgataatggcggcgccaccactggcaccacc
atccgccagcgttactggcccgtcgcgggtttgaacaagctggacgccgtgtgccggatt
ctggaagcagaagaacacgatgcggtgttggttttcgtgcgtaccaaacaggcgacactg
gaactggccgagcagctcaaccgccgcggcctgcgtgccgaagccctgaacggcgatatt
ccccagcagcagcgggaaaaaaccgtacagcgtctgaaagacaagcgtttcgacctgctg
atcgccaccgatgtggttgcccgtggcctggacgtgccgcgcatcacccacgtggtgaac
tacgacatgcccggcgacccggaagcctacgtgcaccgcatcggccgtaccggccgggcc
ggtcgccagggtgacgccatcctgtttgtggctcgtcgtgagcaacacgtgttgcgtcaa
atcgaacgcattactcgccagtccatcgaaaagatggcgcttccctccgttgatgacctc
aatgccaagcggattgcccgctttcaggagcaactggccgggttcacctctggagccaac
gttgatgaagcccgcgcgctggtgaatcaactacgtgacgccatggatatcagcgacaat
gacatggcggccgcactggccaccatgatgttcaaacgcgaaccgttgattctgaaagaa
cccaagatggtcaaagaaccgcgccgtcgcgaatccgcccacgtgggtggccgtcgcgaa
gaccgtaacccgcgcaaccgcggcgacaaaggtcgcacagacaaaaccatgcgtcgctac
cggatcaaggtaggtcacgatcacggtgtgaagccgggcaatatcgttggtgccattgcc
aatgaagctaaactgcctagccgcctgattggtccaatcaagatccatcaggaccacagc
accgtggaattgccagaagacctgtctccaaagcagttgcacgttatccgtaccgcgcgg
gtctgccagcaggctctagacctagaaatggtataa
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