Alteromonas mediterranea DE: MADE_1003355
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Entry
MADE_1003355 CDS
T00747
Name
(GenBank) RNA polymerase sigma factor
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
amc
Alteromonas mediterranea DE
Brite
KEGG Orthology (KO) [BR:
amc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amc03021
]
MADE_1003355
Transcription machinery [BR:
amc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MADE_1003355
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AEA96819
UniProt:
F2G8B8
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All DBs
Position
complement(686284..687276)
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AA seq
330 aa
AA seq
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MGKSNKALESKSQDDLEVIDMPADMKADEALTNDAELENDDAIFSQDDQPKNLDATQLYL
GEIGFSPLLTAEEEVYFARRSLKGCEASRKRMIVSNLRLVVKIARRYNNRGLALLDLIEE
GNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAS
RELSQKLDHEPTAEEIAAALDKPVEDVTKMLRLNERITSVDTPIGGENDKALLDIIADEK
EFSPEESLQDSDIKSNIITWLEELNPKQREVLARRFGLMGYEPSTLEDVGAEIGLTRERV
RQIQVEALRRLRDMLGHQGLSLENLFDQMK
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgggtaagtcaaataaagccttagaatcaaaatctcaagatgacttagaagtcatcgac
atgccagctgatatgaaagctgacgaagccttgaccaacgacgctgaactagaaaatgac
gacgccattttcagtcaggacgaccaacctaaaaacctagatgcaacacagctttatcta
ggcgagattggattttcaccactgctaaccgcagaagaagaagtttattttgcgcgccgc
tcactgaaaggctgcgaggcctctcgtaaacgtatgattgtaagtaacctgcgcctagtc
gttaagattgcacgccgttacaataatcgtgggttggcacttcttgatttaattgaagaa
ggtaatttagggcttattcgcgctgtcgaaaagttcgaccctgaacgcgggttccgcttt
tccacatacgccacgtggtggattcgacaaaccatcgaacgcgccatcatgaatcaaacg
cgtactatccgtttgcccattcatgtggttaaagaactcaatgtttatttacgcgcttca
cgtgaactttctcaaaagttagatcatgagcctactgcagaagaaattgcagcggcacta
gacaagcctgtagaagatgtcacaaagatgcttcgactaaacgaacgcattacctctgtt
gatacgcctattggcggagaaaatgacaaagctttgctcgacattattgctgatgaaaaa
gagttcagccctgaagagagccttcaagactcagacatcaaaagtaatattattacctgg
cttgaagaacttaaccctaaacaacgcgaagtactcgcacgccgttttgggcttatggga
tacgagccatcgacgttggaagatgttggtgcagaaattggcctaacacgtgagcgtgtt
cgtcagattcaagtagaagcactacgccgtcttcgcgatatgctgggccatcaggggctt
tcattagagaatctgttcgaccaaatgaagtag
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