Amycolatopsis mediterranei U32: AMED_4189 Help Entry AMED_4189         CDS       T01269                                  Symbol lig Name (GenBank) ATP-dependent DNA ligase   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism amd  Amycolatopsis mediterranei U32 Pathway amd03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:amd00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     AMED_4189 (lig)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:amd03400]     AMED_4189 (lig) Enzymes [BR:amd01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      AMED_4189 (lig) DNA repair and recombination proteins [BR:amd03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      AMED_4189 (lig) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_Prim-Pol LigD_N DNA_primase_S Motif Other DBs NCBI-ProteinID:  ADJ45964 UniProt:  A0A0H3D8U5 LinkDB All DBs Position 4598865..4600442 Genome browser AA seq 525 aa AA seqDB search MAADPARKLRRYQEMRDFGRTAEPAGGSAGPDGHRFVVQRHRARRLHYDFRLELGGVLVS WAVPKGPTLDPKARRLAVHVEDHPIEYAGFEGVIPRGEYGGGDVIVWDRGVWRPVEPDPA RAIEAGTLHFDLEGEKLAGRFVLVRTSRGEKDQWFLLHKQDEHAQAGWDAEDHPRSVKSG RTNDEVAAAPDALWHGDRPAAEAEESVGGWQAPTEDELAALDALGVKGRWSVAGRELALT NLDKVLFPAAGGGKPVTKRDLIRYYATVGPVMLPYLAGRPLNTHRFPQGVTEPGFWQKEV PRHAPDWLTTWRNERAEPGESRRYVVADSVATLAWLANYGALELHAWTSRAADVDHPTWV LFDIDPGPETTFEEVLELARLHRTALEHLGLTGRPKVTGQRGIQVWVPIAPHCTFEQTRA WAETVSRTIGRVLPDLVSWAWTKDKRRGRARLDYTQNVLNKTLVAPYSVRPRPGAPVSVP LEWAELDDPRLAPDRWTIRDVPGRLAEHGDPFSVLLGLEQKLPGL NT seq 1578 nt NT seq  +upstreamnt  +downstreamnt atggcagcagacccggcccgcaaactgcggcgctaccaggagatgcgcgacttcggccgt accgcggagccggccggcgggtccgccggtccggacggccaccggttcgtggtgcagcgg caccgcgcgcgccggttgcactacgacttccgcctcgaactcggcggcgtgctggtcagc tgggcggtgccgaagggcccgacgctggacccgaaggcccgccggctggccgtgcacgtc gaagatcacccgatcgagtacgccgggttcgagggcgtcatcccgcgcggcgagtacggc ggcggggacgtcatcgtctgggaccgcggcgtctggcggccggtcgaacccgacccggcg cgcgcgatcgaggccgggacgctgcacttcgacctcgaaggcgagaagctggccgggcgg ttcgtcctcgtccgcaccagccgcggcgagaaggaccagtggttcctcctgcacaagcag gacgagcacgcgcaggccggctgggacgccgaggaccacccgcgctcggtgaagagcggc cgcaccaacgacgaggtcgcggccgctcccgacgccttgtggcacggcgaccgtccggcc gccgaggcggaggagtccgtcggcggctggcaggccccgaccgaagacgaactggccgcc ctcgacgccctgggcgtcaagggccggtggtcggtggcgggccgcgagctggcgctgacc aacctggacaaggtgctcttcccggcggccggtggcgggaagccggtgaccaagcgggac ctcatccggtactacgccaccgtcggcccggtcatgctgccgtacctggccggccgcccg ctcaacacccaccggttcccccagggcgtcaccgagccgggcttctggcagaaggaggtc ccgcggcacgcgcccgattggctgaccacgtggcgcaacgagcgcgccgagccgggggag agccggcggtacgtcgtcgccgacagcgtcgcgaccctggcctggctggcgaactacggc gcgctggagctgcacgcctggacttcccgcgccgccgacgtcgaccacccgacgtgggtg ctgttcgacatcgacccgggcccggagacgacgttcgaggaggtcctggagctggcgcgg ctgcaccgcaccgcgctcgagcacctgggcctcaccggacggcccaaggtgaccgggcag cgcggcatccaggtgtgggtgccgatcgccccgcactgcacgttcgagcagacccgcgcg tgggcggagacggtgtcccggacgatcgggcgggtgctgcccgacctggtcagctgggcc tggacgaaggacaagcgccgcggccgcgcccggctggactacacgcagaacgtgctgaac aagacgctcgtcgcgccctacagcgtccgtccgcggcccggcgcgccggtttcggtgccg ctggagtgggccgagctggacgacccgcggctcgcgcccgaccggtggacgatccgggac gtccccggccgcctggctgagcacggagacccgttctcggtgctgctcggtctcgaacag aagctgccgggcctgtag

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