Aeromonas media: B224_2403
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Entry
B224_2403 CDS
T03075
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
amed
Aeromonas media
Pathway
amed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B224_2403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amed03019
]
B224_2403
Enzymes [BR:
amed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B224_2403
Messenger RNA biogenesis [BR:
amed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B224_2403
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
Flavi_DEAD
UTP25
Motif
Other DBs
NCBI-ProteinID:
AHX61012
LinkDB
All DBs
Position
complement(1899585..1900985)
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AA seq
466 aa
AA seq
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MSFTSLGLAEPLLRAVAEQGYDTPSPIQQQAIPAVLAGRDLMAAAQTGTGKTAGFTLPML
QRLTESKRKVSPNRIRALVLTPTRELAAQVGESVRNYGKHLPIRSHVVFGGVSINPQMMA
TRRGLDVLVACPGRLMDLYNQNAVKFDEVEILVLDEADRMLDMGFIRDIRRILALLPKKR
QNLLFSATFAEEIRELATGLLDNPAVIEVAPRNSTAERIEQLVHPCDKANKIALLSHLVT
SNDWQQVLVFTRTKHMANRVAETLDKNGVSAAAIHGNKSQGARTRALAGFKEGSVKVLVA
TDIAARGLDIDKLPQVVNFELPNVAEDYVHRIGRTGRAGAAGHAISLVAADEGKLIKAIE
RLTKQNIPCEQVAGFEASRETLDNIARGIGAPLRKEPRDPSEQRRAPRPQGQGQRQGAGR
SASNGNAGGARTGNGGKPKPQGGQRPADGAAKPAQARRPRRASHNQ
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgagttttacttccctcggtctggccgaacccttgttgcgtgccgttgccgagcaaggc
tacgacaccccgtctcccatccagcaacaagcgatcccggccgtcctggctggccgtgac
ctgatggccgccgcccagaccgggaccggcaagaccgcaggctttaccctgccgatgctg
cagcgcctcaccgaaagcaagcgcaaggtctcccctaaccgcattcgtgccctggtgctg
accccgacccgcgagctggccgcccaggtgggcgagagcgttcgcaactacggcaagcac
ctgccgatccgcagccacgtcgtcttcggcggcgtcagcatcaatccgcagatgatggcg
actcgccgtggtctggacgtgctagtggcctgcccgggccgcctgatggatctctacaac
cagaacgccgtgaaattcgacgaagtcgagatcctggtgctggatgaagcggaccgcatg
ctcgacatgggcttcatccgcgacatccgccgcatcctggccctgttgccgaagaagcgt
cagaacctgctcttctccgccaccttcgctgaggaaattcgcgagttggccaccggcctg
ctggacaacccggcggtgatcgaagtggcgccgcgtaacagcaccgccgagcgtattgaa
cagctggtgcacccgtgcgacaaggccaacaagatcgcgctgctgagccacctggtcacc
agcaacgactggcagcaggtactggtgttcacccgtaccaagcacatggccaaccgcgtt
gccgagaccctcgataagaacggcgtcagcgccgccgccatccacggcaacaagagccag
ggtgcccgtacccgcgccctggccggtttcaaggaaggtagcgtcaaggtgctggtcgcg
accgacatcgccgcccgtggtctggacatcgacaagttgccgcaagtggtcaacttcgag
ctgccgaacgtggcggaagactatgtgcaccgcatcggccgtaccggccgcgccggtgca
gccggtcacgccatctccctggtcgccgccgatgaaggcaagctcatcaaggcgatcgag
cgtctgaccaagcagaacattccttgcgagcaggtggccggttttgaagcctcccgcgag
accctcgacaacatcgctcgtggtatcggcgcgccgctgcgcaaagagccccgcgatccg
agtgagcagcgccgtgcgccgcgcccgcagggtcagggccagcgtcagggtgccggtcgt
tctgcctccaatggcaatgcaggtggtgcccgtaccggtaacggtggcaaacccaagccg
caaggtggtcagcgtcccgccgatggcgccgccaaaccggcccaggctcgtcgtccccgc
cgcgccagccacaaccagtaa
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