Alteromonas macleodii English Channel 673: AMEC673_11295
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Entry
AMEC673_11295 CDS
T02254
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
amg
Alteromonas macleodii English Channel 673
Pathway
amg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AMEC673_11295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amg03400
]
AMEC673_11295
Enzymes [BR:
amg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AMEC673_11295
DNA repair and recombination proteins [BR:
amg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AMEC673_11295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
ParB
ResIII
Motif
Other DBs
NCBI-ProteinID:
AFT74949
LinkDB
All DBs
Position
complement(2634669..2638634)
Genome browser
AA seq
1321 aa
AA seq
DB search
MSYNPTSSDNPIDEQSQPQTDDHSGTEAQLLDVVAMPLKGRHLIEASAGTGKTFNITRLY
LRLLLEKKLTVKEILVMTFTKAATEEIKGRIAATLREALLIWQQAKDNGNEIDSGCDPVY
QYLFNSCDIDESLALLKAAQLELDEASVFTIHGFCQHVITQLAFNSGFAMSLNLGNDTSD
LYLEAAEDFIRKISKSEDEFRLLAESGWHTPEKLLREFNASIKSTLTPILLSEEDIEAAC
KKQLDEAPHTSLAYVKSLLQSVEDNEGLLVEQLIKTPAHKKERPQELAALRAWLRSCVDE
QSYYLPPPEAEAFVKGTRYARNSSGVKEILTPIKDFAGALKKAFGEKDKALSKVPVFKLV
VEAIAFIKSRVEKQKKQLGVIDFDDLIRMLADEVVKPNNTLVPELRKKFPVALIDEFQDT
DAKQYAILDAVYPNLENANESALLMIGDPKQAIYRFRGGDIFTYLKAGRQADYRWVMNTN
WRSVEGMVKAYNRLFYGAPVASNKPADVFGFNIKYNPVEFTPKAAAAKTPLIDPAEQDNV
MKSAVMKSGVMKSAVTKRSAMNYVSMCLDDKENAHIMRRKMAQWIAQEIYRLLNEAHFQT
ANGGTAPVKPQDIAILVKDRTEAGAIKSVLQQKGLACVYLSDRSNLFASAEAKDVLRLLN
GIWHANDNSKVASSLASPLWGYSAQTLIELLYHEDDAQWDAAIDKVLSLRDMWLQKGCMS
VLLYLMQDSYQPHADSVERALTNYQHLAEVLEKASTTHQRPEQLLDWLNKQIHKPESDEE
LTLRLESDSQLIRLITQHGSKGLEYPIVFVPFATGYRDAAKNGNTTSQIFTYYDEEKQDL
QMQLGQTPQAIARVQSESEAEDMRLAYVAVTRAAHRCYMGVVPLTNNERSALARALGVGG
DGSNNDWSSVLNRVAEEEASHASHIDGDEFEEVYTGFEQEDELPQLTALQFTGTASEEWR
LYSFSAMSRLTTVGANQSVERGTAAESGATTEPLGQTLPSVPVLQTIRDEEVYASDPLMG
EMGSIDADINSSAGIESTVSKSDLRFTLEKGASAGNLLHDILEHSDFSAPDWEETGKELV
NRFGLDEKRTPLLYEWLEEALQTPLYPNMQLSMSDLPLVQTLREAEFYFPMNDTQWTQLR
EVLATHRQNVADVIGGEMETAPQLITAKLQGMMHGFIDLIFEHDGQFYVADYKSTWLGDT
LDSYTPTALFHNNQHHLYDLQYLIYCLALHRYLKNTLPNYDPDMNFGGVYYLYLRGMHPE
NERGEGVFYTDVPSSVLNRLDGIFASKDDAQQGNSSSNAGSSHQPLEQTSSGQQQFSFDD
E
NT seq
3966 nt
NT seq
+upstream
nt +downstream
nt
atgagttacaaccctacatcctctgataaccctatagacgaacaatctcagccgcaaacc
gacgaccacagcggcactgaagcgcaattactcgatgtagtcgctatgccgttaaaaggg
cgccaccttattgaagccagcgctggtacaggtaaaacctttaatattacgcgcttgtat
ctgcgtctattgcttgaaaaaaagctcaccgtcaaagaaatattggtgatgactttcacc
aaagccgcgaccgaagaaataaaggggcgtattgcggcaacactaagagaagccctcctt
atttggcagcaagccaaagataacggcaatgaaatagacagtggctgtgacccggtttat
cagtatttatttaatagctgtgatattgacgagagtttggcacttttaaaagcggcgcag
ctggagcttgatgaagcctcggtgtttactattcacggcttttgtcagcatgttattacc
caattagcatttaacagcggctttgccatgtcgcttaatttgggcaatgacaccagcgac
ttataccttgaagctgccgaagacttcattcgaaaaattagcaaaagtgaggacgagttt
aggctactggcagagtctggctggcatacacctgaaaaactgctgcgagagtttaacgcc
agcattaaaagtactctgaccccaatattacttagcgaggaggatattgaagcggcttgt
aaaaagcagttagatgaagcgccgcacacgtctttagcctacgtgaagtctctacttcaa
agcgtagaagacaatgaagggctattggtagaacagctcatcaaaacaccggcccataaa
aaagaacggccgcaggagttggctgcacttagagcttggttgcgctcttgcgtagatgaa
caaagttattaccttccgccgcccgaagcggaagcctttgttaaaggtacccgatatgcg
cgaaactcatcaggcgtaaaagagattttaacgcctataaaagactttgcaggggcgctt
aaaaaagcgtttggcgagaaagataaggcacttagtaaggtgcctgtattcaagctggtg
gttgaagccattgcgttcatcaagtcccgcgttgaaaagcagaaaaaacagcttggcgtt
atcgacttcgacgatcttattcgcatgctcgccgacgaggtggtgaagccaaataatact
cttgtgcctgaacttcgcaaaaaatttcccgtagcacttattgacgaatttcaagatacc
gatgcaaagcagtacgcgattttagacgcagtttatcccaatcttgagaatgctaacgaa
agtgcgttattaatgataggtgaccccaagcaggcgatttatcgctttcgcggtggcgat
atttttacctatttaaaggcgggcaggcaggctgattaccgctgggtaatgaataccaac
tggcgctcggtagagggcatggttaaagcctataatcgattattctacggtgcgcctgta
gcatcaaataaacccgccgatgtgtttggctttaacatcaaatacaaccctgtggaattt
acgcctaaagcagccgcggcaaaaacgccacttatcgaccctgccgaacaagacaatgta
atgaaaagtgctgtaatgaagagcggtgtaatgaaaagtgctgtaacgaaacgcagcgca
atgaactacgttagcatgtgtttggacgacaaagaaaacgcccacattatgcgtcgcaaa
atggctcagtggattgcgcaagagatttaccgcttattgaacgaagcgcactttcaaacc
gccaatggtggcaccgcgcctgttaagcctcaggatatcgctatcttggtgaaagacagg
accgaagctggcgctatcaaaagtgtactgcagcaaaaaggcttggcgtgcgtttattta
agcgatcgcagtaacttatttgccagtgccgaagccaaagatgtactgcggttacttaac
ggtatttggcatgctaacgacaacagtaaagtagcgtcgagcttggcgtcaccgctttgg
ggttatagtgcccaaacacttattgaattgctataccatgaagatgacgcgcagtgggat
gcggctatcgacaaggtattgtcgctgcgggatatgtggctgcaaaaagggtgcatgagt
gtgctgctgtatctaatgcaagacagctatcaacctcatgctgacagcgtggaacgcgcc
cttactaactatcagcatttggccgaagtgctggaaaaagctagcactactcaccagcgc
ccagagcagctactcgactggttgaataagcaaattcataagcctgaaagcgatgaagag
cttactttgcgccttgaaagtgacagccaacttattcgacttattactcaacacggctcg
aaagggctagagtaccccatcgtgtttgttccttttgccaccggctacagagacgccgct
aaaaacggcaacactacatcgcaaatatttacctattacgacgaggaaaaacaagattta
caaatgcagcttgggcagacgccacaggccatagctcgcgttcaaagcgagagcgaagcg
gaagacatgcgactggcctatgtggcggtaacacgagctgcccatcgctgttacatgggc
gttgtaccgctgactaacaatgaaagaagtgcattagcacgagcactcggtgtaggtggc
gacggcagcaacaacgattggtcgagtgtgttaaaccgtgttgctgaagaagaagcgtcc
catgccagccatatcgacggtgatgagtttgaggaagtgtatactggctttgaacaagaa
gatgagttacctcagcttaccgcgttgcaatttaccggcacggcaagcgaagaatggcga
ctgtattcattctcagcaatgagccgtttaaccacggttggtgctaaccaaagcgttgaa
agaggcacagcagcagagtccggcgcaacaacagagcccttgggtcaaacccttcctagt
gtgcccgtacttcaaaccattcgagatgaagaagtgtatgcaagcgacccccttatgggt
gagatgggctcaattgatgcagacatcaattcctcggcaggtattgaaagtacggtaagt
aaaagtgatctgcgttttaccctagagaaaggtgcgagcgcaggtaatttacttcacgat
attctagagcacagtgactttagtgcgcccgattgggaagaaacgggtaaggaactggtt
aaccgcttcgggttagatgaaaagcgaacgccgctactttatgaatggttagaagaagcg
ctacagacgcctctgtatcccaatatgcagctaagtatgagtgatttgcccttagtgcaa
accctgcgcgaagccgaattctattttccaatgaacgacacgcaatggactcagcttcgt
gaagtactcgctacccataggcaaaacgtagctgacgttattggtggcgagatggaaaca
gcgcctcaattaatcacagctaaattacagggaatgatgcacgggtttattgatttgatt
tttgaacatgacggtcagttttatgtagcagactacaaatcaacctggcttggcgatacc
cttgatagctacacgccaacagcgctgtttcacaataaccagcatcacctttacgacctt
cagtacttaatttactgcttggcgctacatcgctatttaaagaatacgctgcctaactat
gacccagatatgaattttggtggagtgtattacttgtatctacgcggtatgcacccagaa
aacgagcgcggggaaggggtattttatactgatgttccatcgtctgtactcaatcgatta
gacgggatatttgcgagcaaagacgatgcccagcaaggcaatagttcttcgaatgcaggc
agctctcaccagcctttggaacaaacgtcttcgggtcagcagcagtttagtttcgatgac
gagtag
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