Alligator mississippiensis (American alligator): 102562455
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Entry
102562455 CDS
T03087
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102562455 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amj03019
]
102562455 (PARN)
Enzymes [BR:
amj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
102562455 (PARN)
Messenger RNA biogenesis [BR:
amj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
102562455 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
NCBP3
RRM_1
CCDC47
Motif
Other DBs
NCBI-GeneID:
102562455
NCBI-ProteinID:
XP_006257909
UniProt:
A0A151N1A7
LinkDB
All DBs
Position
Un
AA seq
638 aa
AA seq
DB search
MEVIRSNFKDTLNKVYDAVEEADFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDHTEEKYIMKSFNFYIFPKPFNRSSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGASSLSYISPNATKCPVTIPEDQKKF
IERVVERIEDFLKKEENESLELEPCTGFQRKLIYQTVSWKYPKGIHVETLETEKKERYII
ISKVDEEERKRREQQKQEKEQGQLNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTIHQF
YCPLPDDLNEFKEVTSCVLPRLLDTKLMASTQPFKELINNTSLAELEKRLKEIPFNPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLGSFLSPPKNHVSARSKLIEPFFN
KLFLMRVTDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQPEQVQIAVNTSRYAESYRIQTYAEYVEKKHEEKRTKRKCTEDSWKEMERKRLK
TQCTPYISQSRYYCVNSFTATSTAGKRSMSPIQEEAGSDDMEEEEVQDTELDERDSCAES
VPGGRKRAKKFKKVKKEQGPTGSITSSSTELFEVPDSW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgatccgaagcaactttaaggacacgctgaataaagtgtacgacgccgtggag
gaagcggacttcctggccatcgacggggagttctcaggcatcagtgatggaccatctgtt
agtgcattaaccaatggctttgacacaccagaagaaagataccagaaacttaaaaagcat
tccatggatttcttgctgtttcagtttggcctttgcacttttaaatatgatcacacggaa
gagaagtacataatgaagtcatttaatttctatatttttccaaaacccttcaacagaagt
tcaccagatgtcaagtttgtttgtcagagttcaagtatagactttttagcaaaccaagga
tttgattttaataaagtttttcgcaatggaataccatatttaaatcaggaagaagaaaga
cagttacgggagcagtatgatgaaaaacgttctcaagccaatggtgctagttccctgtca
tatatttctcctaatgccacaaaatgtcctgtgacaattcctgaagatcagaaaaaattc
attgagagggtggtggagcgaatagaagatttcttaaagaaggaagaaaatgaaagtttg
gaactggagccatgcacaggatttcagaggaaattaatttatcagacagtgagctggaaa
tatccaaaaggtatccatgttgaaactctggagacggagaagaaggaaagatatattatc
attagcaaggtagatgaagaagagcgcaaaagaagagaacagcagaaacaagaaaaagaa
cagggacaacttaatgatgcagtgggattttccagagtcatccatgccattgctaattct
ggcaagcttgttattggacacaatatgctactggatgtcatgcacactatacaccagttc
tactgtcccctgcctgatgaccttaatgagttcaaggaagtaacatcctgtgttcttccc
aggctattggatactaaactgatggcaagtacacaaccttttaaggagctaattaataac
acgtcccttgcagaactggaaaagcgtttaaaagagattccattcaatcctcctaaagtt
gaaagtgcagaaggatttccaagttacgacacagcttctgaacagcttcacgaagcaggc
tatgatgcttacataacaggactgtgtttcatctccatggctaatttcctgggttcattt
ctcagtcctccaaaaaatcacgtatctgctagatcaaaactcattgaacctttttttaac
aagttatttcttatgagagtaacggacataccatacctgaatttggaaggaccagacttg
cagccaaaacgggatcatgttcttcatgttacgtttcccaaagagtggaagaccagtgac
ctttaccagctcttcagtgcctttggtaatattcaggtgtcctggattgatgatacgtca
gcctttgtgtcgctaagccagccagagcaagtacaaatagctgtaaacaccagcaggtac
gctgaaagttataggatccagacctatgcagaatatgttgagaaaaaacatgaagagaaa
cgaacaaaaagaaaatgtacagaagatagttggaaggagatggagagaaaacgattaaaa
actcagtgcacaccatacatttcccagagtcggtactactgtgttaacagttttacggcg
actagcacagcaggaaagagaagtatgagtccaattcaggaggaagctggctctgatgat
atggaagaagaggaagtccaagacacagagctggatgagagagactcctgtgcagagtct
gttccaggtggaaggaagagagccaagaagttcaaaaaggtcaagaaggagcagggtcca
acaggaagcatcacaagcagttccactgaactctttgaagtccctgattcgtggtag
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