Alligator mississippiensis (American alligator): 102575549
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Entry
102575549 CDS
T03087
Symbol
HCFC1
Name
(RefSeq) host cell factor 1
KO
K14966
host cell factor 1
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03083
Polycomb repressive complex
amj04980
Cobalamin transport and metabolism
amj05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
102575549 (HCFC1)
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
102575549 (HCFC1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
102575549 (HCFC1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
amj01009
]
102575549 (HCFC1)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
amj03036
]
102575549 (HCFC1)
03029 Mitochondrial biogenesis [BR:
amj03029
]
102575549 (HCFC1)
Protein phosphatases and associated proteins [BR:
amj01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
102575549 (HCFC1)
Chromosome and associated proteins [BR:
amj03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
102575549 (HCFC1)
HMT complexes
COMPASS/SET1 complex
102575549 (HCFC1)
MLL-HCF complex
102575549 (HCFC1)
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
102575549 (HCFC1)
Mitochondrial biogenesis [BR:
amj03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
102575549 (HCFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Kelch_3
Kelch_5
Kelch_1
Kelch_4
Kelch_2
Kelch_6
fn3
Motif
Other DBs
NCBI-GeneID:
102575549
NCBI-ProteinID:
XP_019351059
LinkDB
All DBs
Position
Un
AA seq
2001 aa
AA seq
DB search
MRLLTALLLPCRYLNDLYLLELRAGSGVVAWDIPITYGVLPPPRESHTAVVYTERDTRKS
KLVIYGGMSGCRLGDLWTLDIETLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPL
VMDDVKVATHEKEWKCTNTLACLNLDSMAWESILMDTLEDNIPRARAGHCAVAINTRLYI
WSGRDGYRKAWNNQVCCKDLWYLETEKPPGPARVQLVRANTTSLEVSWGAVPTADSYLLQ
LQKYDLPAAASPAPTPVPSVPANPPKSPAPAAAAPVAPTPAAAAPPLAQVGITLLPPATA
APAPATTALQVLPASAALPVASSPRTQGVPTVLKVPGPQASPGPPLVTVRSAGQVGKAPV
AVTSLPAGVRMVVPTQTAQGTVIGSSPQMSGMAALAAAAAATQKIPPASAPTVLSVPAGT
TIVKTVAVSPGTTSLPATVKVASSPVMVSNPATRMLKTAAAQVGTSASVVTSATPTRPII
TVHKSGTVTVAQQAQVMTTVVGGVTKTITLVKSPISVPGGSALISNLGKVMSVVQTKPVQ
SSAVTGQASSGPVTQIIQTKGPLPAGTILKLVTSADGKPTTILTTTQAGGSTAKPTILGI
SSVSPSTTKPGTTTIIKTIPMSAIITQSGATGVTSSPGIKSPITIITTKVMTSGTGTPAK
IITAVPKLATGHGQQGVTQVVLKGAPGQPGTILRTVPMGGVRLVTPVTVSAVKPTVTTLV
VKGTTGVTTLGTVTGTVSTSLAGAGGHSANASLATPITTLGTIATLSSQVLNPAAITVSA
AQTTMAPAAGLATPTITMQPVSQPTQVTLITTPSGVEAQPVHDLPVSILASPTAEQPAAA
VSLAEPSPSDPSPGTVTLVCSNPPCETHETGTTPTATTVLSAGARPCANPPCETHETGTT
PTPTAANPPCYTRHTSATGTTMTAIAGSSTGQHLGANPLCETHKTSLTNIATAATNEQLC
TNPLFETGSINTATMATAGRLCTNPPCEVHESDTPSMAMTATAGQRLCFNPPCETGVTST
AMVGQRLCSNPPCETHETGTTSTATTATAGQRLFSNPPCETGTINTAMARQRLCTNPPCE
MHETGTTNTATTATAGQRLCSKPPCETHETGTTNTATTARSHMGRGPGVPPTPPCHTQQT
SSTGTTMSVRAGEGQQSRAGWLAQAPPPRTAPTPPTVPESQPRPTPDTHVLPWACGDPPC
ETHKTGTTNTATVAMAGQRACTSPKCETHEKGTTNTATTAVAGQYLCSSSLCETSSTSMA
MIATARQQACTKPLCEMHETSATHTAVTVTATQRLCSNPPCETHETGTTSTATTATAGQR
LCSNPPCEMHETGTTSTTTTATAGQRLCSNPPSETGATTTLAGQRLCSNPPCEMHETGTT
NTATTATANMGGGHGQGQEPDGATDPCDPQPAGTATVAEAAATHPLGEPPSKGEPPATTT
APPSPLHTCSNPPCETHETGTTHTATTVTASIGPSQDQPPAANGQGEPETTQAEGSAAAP
SSNASPGPSLAQPRAVTTVTQSTPAPGPAVPAISSLTEPPAEDKPEAAPAAEPPVPPGPE
PASSEPPEQLQLAEEPPASPTPPAVHELPPPELAPTVPEEPPLPPTGPIPDPVAVVVMPE
GPTSGPPAPQPEVEPLGLPQELMAEGQAGAATTLMVTGLTPEELAVTAAAEAAAQAAATE
EAQALAIQAVLQAAQQAVMGAGEPLDAAEAGTGPAELGALGAEGPEGPPATIPIVLTQQE
LAALVQQQQQLQEAQAVAAASQAQHGTALHLPTEALAPADSLNDPASESNGLAELPGPAG
PTPGLPPPPPDSLAPSSTFVAPQPVVGPSPAKLQAAAALAEVANGIEPAPVKPDPSVPPP
KALVKKENQWLDVGVVKGTNMMVTHYFLPPDDAPPTDDDSGTIPDYSQLKKQELQPGTAY
KFRVAGINACGRGPFSEISAFKTCLPGFPGAPCAIKISKVCVCARPIPPPHAHGKDRQIC
AVTAFGGPGRRSGHRPGSTRH
NT seq
6006 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctgctgactgccctcctactcccctgcaggtacctgaatgacctgtacttgctg
gaactgcgggcaggctcaggtgtggtggcctgggacatccccatcacgtatggggtgttg
ccaccgccccgtgagtctcacacagctgtggtctacactgagcgtgacacccgcaagtcc
aagcttgtcatctacggtggcatgagtggctgccgcctcggtgacctctggacccttgat
atcgagaccctgacatggaacaagcccagcctgagtggagtagcacccctgccccgcagc
ctgcattctgccaccaccattggcaataagatgtatgtgtttgggggctgggtacccctc
gttatggatgacgtcaaggtggccacacacgagaaggaatggaaatgcaccaacactctc
gcctgcctcaacctggattcgatggcatgggagtctatcttaatggacacactggaggac
aacatcccacgagcacgggctggacactgtgctgtggccatcaacacacgcctctacatc
tggagtgggcgtgatggttaccgtaaggcttggaacaaccaagtttgctgcaaggacctc
tggtacctcgagactgagaagcctccagggccggcacgggtacagctggtgcgggccaac
acaacatcattggaggtgagctggggcgcagtgcccacagccgactcctacctcctgcag
ttgcagaagtatgacctgccagcggctgcttcacctgcacctacccccgtgccctcggtg
cccgccaacccacccaagagccctgcgcctgctgccgctgcacctgttgcccctacgcct
gctgctgctgctccacccctggcccaggtgggcattactctgctgcccccagccactgct
gcacctgctcctgccaccactgccctgcaggtgctgcctgccagtgctgccctgcctgtt
gcctccagcccccgcacacagggtgtgccaacagtgctcaaagtgccaggcccgcaggcc
tcgccagggcccccactggtgacagtgcgctcagctgggcaggttggcaaggccccagtc
gccgtcacctcactgcctgctggtgtgcgcatggtagtacccacccagactgcccagggc
acggtgattgggagcagcccccagatgagtggtatggcggcactggcggcagcagcggct
gccacacagaagatcccgccagcctcagcacccacggtgctcagtgtcccagctggcacc
accatcgtcaagactgtggctgtgtcccctggtaccacctcgttgcctgccaccgtcaag
gttgcctcctcacctgtcatggtgagcaacccagcgacacggatgctgaagacagcagcg
gctcaagtgggcacatcggcctcggtggtcacatcagcaacacccacacggcccatcatc
actgtgcacaaatcaggcactgtcactgtggcacagcaggcccaagtcatgaccaccgtg
gtgggtggtgtcaccaagaccatcactctcgtcaagagccccatctccgtgcctggtggc
agtgccctgatctccaacctggggaaggtgatgtcagtggtgcagacgaagccggtgcag
agctctgcggtgaccgggcaggcgtctagtgggcctgtcacgcagatcatccagacaaag
ggtccactgccagcaggcacgattctgaagctggtgacatcagcggatgggaagcccaca
accatcctgacgacaacacaggcaggcggcagcacagccaagcccactatcctgggcatc
agcagcgtctcacccagcaccaccaagcccggcaccaccaccatcatcaagactatcccc
atgtcagccatcatcacccagtccggcgctaccggtgtgacgagcagtcctggcatcaag
tcccccatcaccatcatcaccaccaaagtcatgacctcgggtactggcacccctgccaag
atcatcacagcagtgcccaagctggccacaggccatgggcagcaaggggtcacacaggtg
gtactgaaaggggcgccagggcagccgggcacaatcctgaggacagtgcccatgggaggg
gtgcgccttgtcacccctgtcaccgtctcagctgtgaagcccaccgtcaccacgttggtc
gtcaagggaaccacaggggtgacgacactgggcacggtgacagggacagtgtcgaccagc
ctagcaggagcaggtggacacagtgccaatgcctcgctggccacacccataactacactg
ggcaccatcgccacgctcagcagccaggtgctcaaccctgctgccatcactgtttcagct
gcccagaccactatggcacctgctgcaggcctagccacgcccaccatcaccatgcagcct
gtgtcacagcccacccaggtgacgctgatcacgacacccagcggtgtggaggcacagcct
gtccatgatctgcctgtgtccatcctggcctcacctacagctgagcagccagcagctgct
gtgagtctggcggaaccaagccccagtgaccccagcccaggcactgtgaccctggtgtgc
tcaaacccaccctgcgagacgcatgagacgggcaccacgcccacagccaccacagtgctg
agtgctggagcccggccctgcgccaaccccccatgtgagacgcatgagacaggcaccacg
cccacgcctacagctgccaacccaccctgctacactcgccacaccagcgccacgggcacc
accatgacagccattgctggcagcagcactgggcagcacttgggtgccaaccctctgtgt
gagacgcacaaaaccagcctcaccaacatagccacagcagccaccaatgagcaattgtgc
accaaccccctgttcgaaacaggcagtatcaacacagccacaatggccacagctgggcga
ttgtgtaccaaccccccgtgcgaggtgcatgagtctgacacccccagcatggccatgact
gccacggctgggcagcgattgtgcttcaaccccccatgtgagacgggcgtcaccagtaca
gccatggttgggcagcgcttgtgcagcaatcccccgtgcgagacgcatgagacgggaacc
actagcacagccacaacagccacagctgggcagcgattgttttccaaccccccatgtgag
acgggcaccatcaacacagccatggccaggcaacggttgtgcaccaacccgccctgcgag
atgcacgagacaggcaccaccaacacagctacaacagctacagctgggcagagattgtgc
tccaaacctccatgtgagacgcacgagacgggtaccaccaacacggccacaacggcccgg
tcccatatgggccgggggccgggggtgccacccactcctccatgccacacgcagcagacc
agttccacaggtaccactatgtcagtgcgagcaggggagggacagcaatcgcgtgctggg
tggctggctcaagccccacctcctcgcacagccccgacccctcccacggtgcctgagagc
caacctcgcccaaccccagacactcatgtactgccatgggcatgtggagaccccccatgt
gaaacccataaaacaggtaccaccaacacagccacagtggccatggctgggcagcgagcg
tgcacaagtcccaaatgcgagacacatgagaagggcaccaccaacacagccacaacggct
gtggctggacagtacttgtgctccagttccttgtgtgaaacaagtagtactagcatggct
atgatagcaacagccaggcagcaagcgtgcacaaaacccctgtgtgagatgcacgagacc
agtgcgacccatacagctgtgacagtcacagccacccaacgactgtgctccaatccccca
tgcgagacgcatgagactggcaccaccagcacagccacaacggccactgctggacagcga
ctgtgctccaatcccccatgtgagatgcatgagaccggcaccaccagcacaaccacaaca
gccacagctgggcaacgattatgctctaatcccccatccgagacaggagccaccacaact
ctggctggacagcgcttgtgctccaacccaccatgtgagatgcatgagacgggcaccacc
aatacagccactactgccacagccaacatgggaggggggcatgggcaggggcaagagcca
gatggtgccacagacccatgtgacccgcagcctgcaggcactgcaacggtagctgaggca
gctgccacccaccccctgggggagccacccagcaagggggagcccccagccaccaccact
gccccccccagccccctccacacctgctccaacccaccctgcgagacccatgagacaggc
accacccacacggccaccactgtgactgccagcatcgggcccagccaggaccagccacct
gctgccaatgggcagggagaaccagagaccacacaggctgaaggcagtgctgcagctccc
agcagcaacgccagccccgggcccagcttggcccagcctcgtgctgtcaccactgtcacc
cagtccacacctgcacctggccctgccgtcccagccatctcatcgctgacagagccacca
gccgaggacaagcctgaggcagcacctgcggccgagcccccagtgccccctggccccgag
ccagcctcctctgagccccctgaacaactgcagctagcagaggagcccccagcgtccccc
acaccacctgctgtgcatgagctgccgcctcctgagctagcccccactgtccctgaggag
ccacccttgccacccactggccccatcccagacccagtggctgtggtggtgatgccggag
ggtcctactagtggccctccagcaccccaacctgaggtggagcccctgggcctgccccag
gagctgatggctgaagggcaggcgggtgctgctaccacccttatggtgacagggctgaca
cctgaggagctggctgtgacagcagcggctgaggcagctgcccaggccgcagccactgag
gaggcccaggccctggccattcaggctgtgctgcaggctgcccagcaggctgtcatggga
gctggggagccactggatgcagcagaagcgggcacagggccagccgagctgggggcgctg
ggggctgaggggccggaggggcctcctgccaccatccctatagtgctgacacagcaggag
ttggcagcattagtacagcagcagcagcagctgcaggaggcacaggcagtggccgctgca
tcccaggcacagcatggcactgccctgcacctgcctactgaggcactggcacctgctgac
agcctcaatgacccagccagtgagagcaatgggctggctgagctgccaggccctgctgga
cccacccctggcctgccccccccaccccctgacagcctagcaccctccagcacattcgtg
gcaccacagcctgtagtgggccccagcccagccaagctgcaggcagctgctgctctggct
gaggtggccaatggcattgagcctgcccctgtgaagccagacccatcggtgccgcccccc
aaggcgctggtgaagaaggagaaccagtggcttgatgtgggcgtggtcaaggggacaaac
atgatggtgacgcactacttcctgccccctgatgatgcacctcccacagatgatgactct
ggcacaatccctgattactcacagctgaaaaaacaggagctgcagccaggcacagcgtat
aagttccgtgtggctgggatcaatgcttgtggccggggacccttctcggagatctcagcc
ttcaagacctgccttcctggcttccctggtgccccctgtgccatcaagatcagcaaggtg
tgtgtgtgtgcccgtcccatcccacccccccacgcacacgggaaggacaggcagatatgt
gcagtgactgcctttggaggtcctgggaggagaagtgggcacaggcctggcagcaccaga
cactga
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integrated database retrieval system
