Alteromonas macleodii Black Sea 11: AMBLS11_15055
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Entry
AMBLS11_15055 CDS
T02260
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
amk
Alteromonas macleodii Black Sea 11
Pathway
amk03420
Nucleotide excision repair
amk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AMBLS11_15055
03430 Mismatch repair
AMBLS11_15055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amk03400
]
AMBLS11_15055
Enzymes [BR:
amk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AMBLS11_15055
DNA repair and recombination proteins [BR:
amk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AMBLS11_15055
MMR (mismatch excision repair)
Other MMR factors
AMBLS11_15055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_12
Viral_helicase1
ResIII
HHH
AAA_30
AAA_11
RecR_HhH
AAA_7
A9CJY8-like_N
Motif
Other DBs
NCBI-ProteinID:
AFT79580
LinkDB
All DBs
Position
3530433..3532523
Genome browser
AA seq
696 aa
AA seq
DB search
MLSHSELNPQQQEAVNYGLSATTVGQTELSNAKHHPLLIIAGAGTGKTNTLAHKTAQLIL
NGVAPERILLMTFARRASAELSSRANRIIERTLREKQKAYHPVTLPWMGTFHSIASRLLR
EHASLIGLDPDFTVMDRNDSADMLDLIRHELGFSGVNRRFPKKKTCLEIYSRCVNAQAPL
IDILDTHFPYCSEWEEELKTLFAHYAKTKIEQVSLDYDDLLLYCFHMAQVDTIAQKVREQ
FDNVLVDEYQDTNVLQAGILKGFFPTGEGLTVVGDDAQSIYSFRSATVDNILNFPNAFSL
PGKVITLQQNYRSHPNILNLSNTLLSESDEGYKVSLFSKRNNGPMPKWVTVENDMFQAEY
IVERVLAAREEGIDLKQQAVLFRSSYHSDRLELELTRRNIPFVKHGGLKFLEASHVKDML
CILRWADNPKHKISAFRVLKLLPGIGPKIAERVFNDLEKHDFALGKLRSFALSESAKPSF
LSLIDLLDNVHHNNIPWTEQTSAIAEFYKDLLEANYDDHFTRFGDIEQLTMISEQYSSRE
RFLTELTLDPPQSTGDLAGKPLLDDDFLILSTVHSAKGQEWKHVFVLNVADGNFPNEYAA
GDKRALEEERRLLYVAITRAKDELSLIQPLKYWVPEQQKFGDKHVYGAKSRFFTDAVSAC
MEPVAYPKRTASASEKKIAKGAIADIKKNILGMWNN
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgctctctcattctgaattaaacccacagcagcaagaagccgtgaattacgggttaagc
gccaccacagtgggccaaacagaattgagtaacgcaaagcaccacccgttattaataatc
gcgggggcgggaacagggaaaaccaacaccctagcccacaaaacagcacaattaatattg
aatggtgtggcgccagaacgaattttattgatgacgtttgctcgaagagcctcggcggaa
ttgagttctcgagcgaaccgcataatagagcgaacgttacgtgagaaacaaaaggcgtat
catccggtcacacttccttggatgggcacttttcattcaatcgcatcgcgactgctacga
gagcacgcttcactcatcggtttagatcccgactttacggttatggatcgtaacgacagc
gcggatatgcttgatttgatccgtcacgagcttggctttagcggggtaaatcgacgcttt
cctaaaaagaaaacgtgtctggaaatttattctcgttgcgtgaacgcacaagcaccgctt
atcgatatacttgatacgcattttccctactgtagcgagtgggaagaagagctaaaaacg
ctgtttgctcattatgcgaaaactaaaattgagcaagtaagtttagactatgacgacttg
ctgctttactgttttcatatggcgcaggttgacactatagcccaaaaagtaagagagcaa
tttgataatgtattggtagacgaatatcaggataccaacgtacttcaagcaggcattcta
aaaggtttcttccctactggtgaaggtcttaccgttgtaggcgatgacgctcaatcaatt
tattcatttcgctcggccacggtggacaatatccttaacttccccaatgcattttccttg
cctggcaaagtgataacgctacaacagaattatcggtcacatccgaacatattgaacttg
tctaataccctgctttcagaaagcgacgaaggctacaaggtgtcgttgtttagcaaacgt
aacaacggtccaatgcctaagtgggtaactgttgaaaatgacatgttccaagcagaatac
attgttgagcgagttttggcggctcgtgaagaagggattgatttgaaacagcaagccgtg
ctgtttcgttcaagttatcacagcgatcgtctagagcttgaacttactcgacgcaatatc
cctttcgttaaacacggtggccttaaatttctggaagcttcgcatgtaaaagatatgctt
tgcattttacgttgggcagataaccctaaacataaaatatcagcctttcgagtgctcaag
ttattgcccggcataggtccgaaaatagctgagagagtgtttaacgatttagaaaagcac
gactttgcattaggtaaattgcgcagcttcgcactctcagaatccgcgaagccttcgttc
ctttctcttatagatttgctagataacgtgcaccacaacaatattccatggaccgagcaa
acaagcgccattgcagaattttacaaagatttgttggaagctaattatgacgatcatttc
acacgtttcggcgatattgaacagctcacaatgatctctgagcagtattcatcgagagag
cgatttttaactgaactcacactagacccaccgcagagcacaggggatctggcaggcaaa
cctttgcttgatgatgactttcttatcttgtcgacggtgcatagcgctaaagggcaagag
tggaaacatgtgttcgtactgaatgttgccgatggcaattttcccaacgagtacgcagcg
ggtgataaacgtgcgcttgaagaggagcgacgcttactttacgttgccataacacgagcg
aaagatgagcttagcttaatccagcccctgaaatattgggtgccagagcaacaaaagttt
ggtgacaagcacgtatacggcgccaagagccgtttttttaccgacgcagttagcgcttgt
atggaaccggttgcatatcctaagcgcactgcttcggccagcgaaaagaaaattgccaaa
ggtgcgattgccgatattaagaagaacattctcggcatgtggaataattaa
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