KEGG   Ailuropoda melanoleuca (giant panda): 100473834
Entry
100473834         CDS       T01329                                 
Symbol
APOBEC1
Name
(RefSeq) C->U-editing enzyme APOBEC-1
  KO
K16932  C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
Organism
aml  Ailuropoda melanoleuca (giant panda)
Brite
KEGG Orthology (KO) [BR:aml00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aml03019]
    100473834 (APOBEC1)
Enzymes [BR:aml01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.36  mRNA(cytosine6666) deaminase
     100473834 (APOBEC1)
Messenger RNA biogenesis [BR:aml03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    APOBEC1-ACF complex
     100473834 (APOBEC1)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     100473834 (APOBEC1)
SSDB
Motif
Pfam: APOBEC4_like APOBEC1 SNAD4 NAD1 APOBEC2 APOBEC_N NAD2 APOBEC4 APOBEC3 APOBEC_C dCMP_cyt_deam_1 Bd3614-deam
Other DBs
NCBI-GeneID: 100473834
NCBI-ProteinID: XP_011235501
Ensembl: ENSAMEG00000007098
LinkDB
Position
16:8597055..8605162
AA seq 235 aa
MASDKGPSGGDATSRRRIEPWEFEVFFDPRQLRKEACLLYEIQWGTSRKIWRNSGKNTTN
HVEINFIEKFTLERQYCPSIHCSVTWFLSWSPCWECSKAIRAFLSQHPSVTLVIYVARLF
WHMEPQNRQGLRDLINSGVTIQIMSVPEYDHCWRNFVNYPPGKDHWPGYPVLWMKLYALE
LHCIILSLPPCLKISRRNQNQLTLFRLTLQNCHYQTIPPHVLLATGLIQLPVTWR
NT seq 708 nt   +upstreamnt  +downstreamnt
atggcttctgacaaaggtccttcaggtggagatgccacctcgaggagaagaatcgaaccc
tgggaatttgaagtcttctttgaccccagacaactccgtaaagaggcctgcctgctctat
gaaatccagtggggcacaagccgtaagatctggcgaaactcaggcaaaaacaccaccaac
catgtggaaatcaattttatagaaaaatttactttggaaagacagtattgcccgtccatc
cactgctccgtcacctggttcctgtcctggagtccctgttgggaatgctccaaggccatt
agagcatttttgagtcaacaccctagtgtgactctggttatttacgtagcacggcttttc
tggcacatggagccacaaaaccggcaaggactcagagacctcattaacagtggtgtgact
atccagattatgagcgtcccagaatatgatcattgctggaggaattttgtcaactaccca
cctgggaaagatcactggccaggataccctgtgctatggatgaagctatatgcgctggag
ctccactgcataattctaagtctccctccttgtttaaagatttcaagaagaaatcagaat
cagcttacattgttcagacttactcttcaaaattgccattaccaaactattccaccccat
gtccttttagctacagggttgatacaacttcctgtgacttggagatga

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