Amycolatopsis sp. YIM 10: YIM_05305
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Entry
YIM_05305 CDS
T06270
Symbol
alkA1
Name
(GenBank) DNA-3-methyladenine glycosylase 2
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
YIM_05305 (alkA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amyy03000
]
YIM_05305 (alkA1)
03400 DNA repair and recombination proteins [BR:
amyy03400
]
YIM_05305 (alkA1)
Enzymes [BR:
amyy01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
YIM_05305 (alkA1)
Transcription factors [BR:
amyy03000
]
Prokaryotic type
Helix-turn-helix
AraC family
YIM_05305 (alkA1)
DNA repair and recombination proteins [BR:
amyy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
YIM_05305 (alkA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
HHH
PKS_DE
Motif
Other DBs
NCBI-ProteinID:
QFU86279
UniProt:
A0A5P9PDC2
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Position
complement(1058167..1059654)
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AA seq
495 aa
AA seq
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MTIAMAAPAPVSLWRDTERCYRAVASRDSRFDGQFIMAVRTTGIYCRPSCPANTPKPQNV
RFYPTSAAAQSGGYRACRRCLPDAVPGSPEWNVRADLAARAMRLIADGIVEREGVPGLAG
RLGYSERQLGRVLTTELGAGPLALARAHRAHAARLLIEMSSLPLTDVAFAAGFASVRQFN
DTIREVFAATPSQLRAARPRQEADPAGMRLSLRLPFRPPFDADGLLSFFAQRAVPLVEET
GPGTYARTLRLPHGPGIARLTPEPDHVRCDLNLVDVRDLSSAVARVRRLFDLDADPQAIA
GVLATDPALAPVFDPGLRVPGAADGHELVVRAMLGQQISVAAARTAAGRLTAELGDPLPD
ALRTGELTRLFPTAQAIAEHGRDVLRGPRKRIEAICGVAASLASGAVSVHVGRICAELRA
DLLALPGIGPWTADYVLMRVLGAPDVLLTGDVALRKGAVALGLPGDPAALSERALPWRPW
RSYAGMHLWRASAGV
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgaccatcgccatggccgcaccggcccccgtgagcctctggcgggacaccgagcgctgc
taccgcgcggtggcctcccgcgactcccggttcgacggccagttcatcatggccgtgcgc
accaccggcatctactgccgcccgtcctgcccggcgaacacgccgaaaccgcagaacgtg
cgcttctacccgacctcggccgccgcccagtccggtggttaccgcgcctgccgccgctgc
ctgcccgacgccgtgcccggctcccccgagtggaacgtgcgcgccgacctcgccgcccgc
gcgatgcggctgatcgccgacggcatcgtcgagcgcgagggcgtgcccgggctggccggc
cgcctcggctactcggaacgccagctcggccgcgtgctcaccaccgaactcggcgccggt
ccgctggcgctcgcccgcgcccaccgcgcgcacgccgcccgcctgctgatcgagatgtcc
tcgctgccgctgaccgacgtcgccttcgcggccgggttcgccagcgtccgccagttcaac
gacaccattcgcgaggtgttcgcggccacgccgtcccagctcagggccgctcgtccacgt
caggaggccgatccggccggcatgcggctgtcgctgcgcctgcccttccggccgccgttc
gacgccgacggcctgctctccttcttcgcccagcgcgccgttccgctggtcgaggagacc
ggccccggcacctacgcccgcacgctgcgcctcccccacggccccggcatcgcccggctc
acccccgagcccgaccacgtccgctgcgacctgaacctcgtcgacgtccgtgacctcagc
agcgccgtcgcccgcgtgcgccgcctgttcgacctcgacgccgacccgcaggccattgcc
ggagtgctcgccaccgatccggcgctggctcccgttttcgaccccggcctccgcgttccc
ggtgcggccgacgggcacgaactggtcgttcgcgccatgctcggccagcagatctccgtc
gccgccgcgcggaccgccgcgggcaggctcaccgccgaactcggcgatccgctgcccgac
gcactgcgcaccggcgagctgaccaggcttttccccaccgcgcaggccatcgccgagcac
ggccgcgacgtgctgcgcgggccgcgcaagcggatcgaggccatctgcggggtcgccgcg
tcgctcgcgtccggtgcggtgtccgtccacgttggacggatctgcgcggagctgcgggcg
gacctgctcgccctgccagggatcggcccgtggaccgcggactacgtgctgatgcgcgtg
ctcggcgccccggacgtactgctcaccggtgacgtcgcgttgcgcaagggcgccgtcgca
ctgggccttcccggcgaccccgccgcgttgagcgagcgcgctttgccttggcgcccttgg
cgttcctacgcgggcatgcacctgtggcgcgcgtcagccggcgtgtag
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