Amycolatopsis mediterranei RB: B737_4141
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Entry
B737_4141 CDS
T02804
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
amz
Amycolatopsis mediterranei RB
Pathway
amz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B737_4141 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amz03019
]
B737_4141 (recQ)
03400 DNA repair and recombination proteins [BR:
amz03400
]
B737_4141 (recQ)
Enzymes [BR:
amz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B737_4141 (recQ)
Messenger RNA biogenesis [BR:
amz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B737_4141 (recQ)
DNA repair and recombination proteins [BR:
amz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
B737_4141 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
DUF3553
PcrA_UvrD_tudor
Motif
Other DBs
NCBI-ProteinID:
AGT84805
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All DBs
Position
4610578..4612200
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AA seq
540 aa
AA seq
DB search
MNDKTVAELRRLAADRFGWAELSAEQAAAMSAASEGRDVLAVLPTGAGKSAIYQVPALVL
PGPTVIVSPLLALQRDQIEGLDAAAVPDAVALDSRQSAGERDRVWEAIRAGTAEYVFLSP
EQLAKDEVVAGLAGAGVSLFVVDEAHCVSAWGHDFRPDYLRLAPVVERLGRPPVIALTAT
AAAPVRDDIVAALGLRDPVRVIASFDRPNLHLVVARFTGDAAKRAAVVDRVAAMPGSGLL
YTASRRETEDYAEALSGRGVRAFAYHAGMKAADRDAVHERFAAGETDVVVATSAFGMGID
QPDVRFVVHASVPDSVDTYYQQIGRAGRDGEPAEVLLCYRPEDLARQRFLTRSAPPEAEL
RAVVEALRPGPLGSRQLAEAVPGPAARRTRALGLLERCGDVVTGPDGRCTLTAARADTGA
VVGRALEAAERAAELVRSRVEMVRAYAETTGCRRRYLLGYFGEELAKPCGNCDLCDAGAE
VEDRPPAGEFHAESVVRHAEWGRGVVMTVEEDKLTVLFDDVGYRTLSLPVVREQALLDRC
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacaaaacggtggccgagctgcgccggctggccgcggaccgcttcggctgggcc
gagctgtccgccgagcaggccgcggcgatgagcgcggcgagcgaggggcgggacgtgctg
gcggtgctgcccaccggagccggcaaatcggcgatctaccaggtgccggcgctggtgctg
cccgggccgacggtgatcgtgtcgccgctgctggcgttgcagcgggaccagatcgagggc
ctggacgccgcggccgtgccggacgccgtggccctcgactcgcggcagtcggcgggggag
cgggaccgggtgtgggaggcgatccgggccggcacggcggagtacgtcttcctgtcgccc
gaacagctggcgaaggacgaggtcgtcgccgggctggccggggcgggggtgtcgctgttc
gtcgtcgacgaggcccactgcgtgtcggcgtggggccacgacttccggcccgactacctg
cggctggccccggtggtcgagcggctcgggcggccgccggtgatcgccctcaccgccacc
gcggcggcgccggtccgggacgacatcgtcgcggcactgggcctgcgcgacccggtgcgg
gtgatcgcgagcttcgaccggccgaacctgcacctggtggtcgcgcggttcaccggcgac
gccgcgaagcgcgcggccgtggtggaccgggtcgcggcgatgcccggcagcggcctgctc
tacaccgcgagccgccgggagaccgaggactacgccgaggccctctccggccgcggcgtc
cgtgccttcgcctaccacgccgggatgaaggcggccgaccgcgacgcggtgcacgagcgg
ttcgccgcgggggagaccgacgtcgtggtggcgacctcggcgttcggcatgggcatcgac
caacccgacgtgcggttcgtggtgcacgcgtccgtcccggactcggtcgacacgtactac
cagcagatcggccgcgccggccgggacggcgaaccggcggaggtgctgctctgctaccgg
ccggaagacctggcgcggcaacggttcctcacccggtccgcgccgccggaggcggagttg
cgagcggtcgtcgaagcgctgcggccgggaccgctgggaagccggcagctcgccgaggcc
gtccccggcccggccgcgcggcggacccgcgccctcggcctgctcgaacgctgcggcgac
gtggtcaccgggccggacggccggtgcacgctcaccgccgctcgcgcggacaccggtgcc
gtcgtcgggcgggcgctcgaagcggcggagcgggcggccgagctcgtccgctcgcgggtg
gagatggtgcgcgcctacgcggagaccaccggctgccgccgccggtacctgctcgggtac
ttcggcgaggaactcgcgaagccgtgcggcaactgcgacctttgcgacgccggtgccgag
gtcgaggaccggccgcccgcgggggagttccacgcggagagcgtcgtccggcacgccgag
tggggccgcggcgtcgtgatgaccgtcgaggaggacaagctcaccgtcctcttcgacgac
gtcggctaccggacgctgtcgctgccggtggtgcgggaacaggcgctcctggaccgctgc
tga
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