Paraurantiacibacter namhicola: A6F65_01826
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Entry
A6F65_01826 CDS
T04447
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
anh
Paraurantiacibacter namhicola
Pathway
anh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
anh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A6F65_01826 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anh03019
]
A6F65_01826 (rne)
03009 Ribosome biogenesis [BR:
anh03009
]
A6F65_01826 (rne)
Enzymes [BR:
anh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
A6F65_01826 (rne)
Messenger RNA biogenesis [BR:
anh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A6F65_01826 (rne)
Ribosome biogenesis [BR:
anh03009
]
Prokaryotic type
rRNA processing factors
A6F65_01826 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
ANU08121
UniProt:
A0A1C7D9X7
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All DBs
Position
1831947..1834739
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AA seq
930 aa
AA seq
DB search
MATRMLIDARHPEETRVAVLKGNRIEEFDFESAEHKQIKGNIYLAKVTRVEPSLQAAFVD
FGGNRHGFLAFSEIHPDYYQIPAADRQALLDEEQAHAEEEEKLRAAEEEESGEPVELEAE
EDEDEDDEPVLEEIDTSEKDEVSTIEEGHVDGKSDDDTDDSSDDEDEDSDGDSDEESDGR
KGRGRRGRGRRQGRQGSSRGGGSRAKEMDELRAKRVALRRRYKIQDVIHRRQVLLVQVVK
EERGNKGAALTTYLSLAGRYCVLMPNSSHGGGISRKISNAGDRKRLKSIVGDLKLPKSMG
LIVRTAGLSRTKTEIKRDFDYLARLWDEIREKTLGSSAPSKIHSDSDLIKRAIRDIYNRE
IEEVVVEGEDGYKAAKAFMKLLMPSHARRVKAYSDPVPLFQRYGAEDQLKAMYDPMVQLK
SGGYLIINPTEALVSIDINSGRSTKEHGIEQTALHTNLEAAKEIARQLRLRDMAGLVVID
FIDMERTGNIRKVERCMKDSLKNDRARIQVGRISGFGLMEMSRQRLRTGVLEATTRECPH
CDGTGLVRTASSAGLSALRLIEDEAAKGKGTVITLYASTEAAVYLLNTKRGDLQEIETRY
GVTVEVQPEGEDEGAKMRVQSSGPKPSSAPKFEPIVDDDADDDDVDADDDDHDEEDDERG
DRGDRDDRGPKRRRRRGGRGRNKKRQDGGDGNETGSDGDDGENRQQADNRGNDDDDDGEG
RPKRRRRRGGRGRRRKSGDAEGGDTDTQAQEDIGEKAGEEIAEQLDETEAANAQAETAGD
DATAEEKPKAKAKRAPRKKAAAKSDDTDEAEAEKPKRRARKKKADVEAEADAAPAAEATE
DAPKPKAKRAPRKRKTDAEAESAPEAAAAAEEAPKPKAKRAPRKKKADVEAEAPADAAPA
APAKDASDEGETAEDGSPKRGGWWQRTFGA
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgcgcatgctaatcgatgcgcgccacccggaagaaacacgggtggcggtgctc
aagggcaatcggatcgaagaatttgatttcgaatccgcagaacacaaacagataaagggt
aacatctacctcgcgaaagtaacgcgagtggaaccatccctgcaggccgcattcgtggac
tttggcggcaatcgccacggcttcctggcgttcagcgaaatccaccccgactattatcag
atccccgccgccgaccggcaggccctgctggacgaggaacaggcccatgccgaggaggag
gaaaaactccgcgcggctgaggaagaggaaagcggcgagccggtagagctggaagccgaa
gaagacgaggacgaggacgacgagccggtcctggaggaaatcgacacgtccgagaaggac
gaggtttccaccatcgaggaaggccatgtcgacgggaaatccgacgacgataccgacgat
tcatccgacgacgaagacgaggattccgacggggattcggacgaagagagcgatggccgg
aagggccgtggccgccgtggccgtggccgccgccagggccgccagggatcgtccaggggt
ggtggcagccgcgccaaggaaatggacgagctgcgcgccaagcgcgtcgccctgcgccgc
cgttacaagatccaggacgtcatccatcgccgccaggtgctgctcgtccaggtcgtgaag
gaagaacgtggcaacaagggcgctgccctcaccacctacctcagcctggccggccgctac
tgcgtgctgatgcccaattccagccatggcggcggcatcagccgcaagatctccaacgcc
ggggaccgcaagcgcctgaaatccatcgtcggcgacctgaagctgcccaagagcatgggc
ctgatcgtccgcaccgccggcctcagccgcacgaagacggagatcaagcgcgacttcgac
taccttgcccgcctgtgggacgagatccgggagaagacgctgggctccagcgcgccgagc
aagatccattccgacagcgacctgatcaagcgggccatccgcgacatctacaatcgcgag
atcgaggaagtcgtggtcgaaggtgaggacggctacaaggccgcaaaggccttcatgaag
ctgctgatgcccagccacgcacgccgggtgaaagcctattccgaccccgtgccgctgttc
cagcgttacggcgcggaagaccagctgaaagccatgtacgatcccatggtgcagctgaag
agcggcggttacctgatcatcaatcccaccgaggcgctggtgtcgatcgacatcaactcc
ggccgttccaccaaggaacacgggatcgagcagactgccctgcacaccaacctcgaagcg
gcgaaggaaatcgctcgccagctgcgcctgcgcgacatggccggcctggtggtgatcgac
ttcatcgacatggagcgcaccggcaatatccgcaaggtcgagcggtgcatgaaggattcg
ctcaagaacgaccgtgcgcgcatccaggtgggccgcatttccggtttcggcctgatggaa
atgagccgccagcgcctgcgcaccggcgtgctggaggcgaccacgcgcgaatgcccgcat
tgcgacggcaccggcctggtccgcacggccagcagcgccgggctttccgccctgcgcctg
atcgaggacgaggcagccaagggcaagggtacggtcatcacgctgtacgcctccaccgaa
gcggccgtgtacctgctcaacaccaagcgcggcgacctgcaggaaatcgaaacgcgctac
ggcgtgacggtggaagtgcagccggaaggcgaggacgaaggcgccaagatgcgcgtgcag
tccagcggacccaagccttcctccgcccccaagttcgagcccatcgtcgatgacgacgcg
gacgatgacgacgtggacgccgatgacgacgatcacgacgaggaagatgacgagcgcggt
gaccgcggtgaccgcgacgatcgtggtccgaagcgccgccgtcgccggggtggccgcggc
cgcaacaagaagcgccaggatggcggtgacggtaacgagaccgggtccgacggcgatgat
ggcgaaaaccgccagcaggccgacaatcgcggcaacgatgacgacgatgacggcgaaggc
cggcccaagcgccgccgccgccgtggtggccgtggccgtcgccgcaagtccggtgatgcc
gagggcggcgacaccgatacgcaggcgcaggaagatatcggcgagaaggccggagaggaa
atcgccgaacagctcgacgagaccgaggctgccaatgcgcaggccgaaaccgccggtgac
gatgcgactgcggaggaaaagcccaaggccaaggccaagcgcgccccccgcaagaaagcc
gcagccaaatccgacgatacggacgaggccgaggccgagaagcccaagcgccgcgcgcgc
aagaagaaggctgacgtagaagccgaagccgatgctgcgcctgcagccgaggcgacggaa
gacgcgcccaagccgaaagccaaacgtgcgccccgcaagaggaagacggacgccgaagct
gaaagcgccccggaagcagccgcagctgccgaggaagcgcccaagcccaaggcgaagcgc
gctcctcgcaagaaaaaggcagacgtcgaagccgaagctcctgcagatgctgctcccgca
gcaccggcaaaggatgcgtccgatgagggtgagacggcagaagacggcagcccgaagcgc
ggcggatggtggcagcgcaccttcggcgcctga
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