Aminobacter niigataensis: AMD1_1538
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Entry
AMD1_1538 CDS
T09606
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
Organism
anj
Aminobacter niigataensis
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Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CAI2932820
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Position
AMD1:complement(1459069..1461522)
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AA seq
817 aa
AA seq
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MAAEKLRTYRQKRDFSRTREPPGALAGHDGNRFVVHKHHATADHYDLRLELGGVLKSWAV
PRGPSLNPADKRLAVETEDHPIEYIDFEGLIPEGEYGGGPMIVWDTGVWAPMEDAEKALA
KGAFKFRLSGEKLKGGWMLARLKPKPDENKHNWLLFKEHDPAADEKLDILQARPESVKTG
RLIEELAGPPKKPPSKPADLKPGKLAGAVRAPMPARIEPQLATAAPKPPSGEGWLHEIKF
DGYRTMVHLEGGTAKLITRSGIDWTKRYGKLAAAFRDLPCSEAVIDGEIVVLDDKGISRF
AALQDALASGHDELLVFYAFDLLHLNGWNLTGTELSKRKGMLETLLAGHVDGRSALQLSG
HVEGDGQALYDQATEMGLEGVVSKRASAHYTSGRSHSWSKTKALDKDDFVIAGYTTSQAA
EGLAALALGEWVDGELQYRGKVGTGFDAETLQSLLHRLEALREGADKLDGAPKEVIPVRP
VLNAHIHYANRTTDNALRHAVFKGLREAELTASAAAPRKRLISDADLAGISITNPTRRVL
GKAGPTKLDVAVYYAAIGDFMLPHILGRPVSLFRCPSSRPQDCFFQRHAFSGMPPTIASF
DTKNSEGETKSYISVEDAKGYLALAQFGVVEFHAWGALRKHLDKPDRVVFDLDPGEGIGW
REVVEAAVHVRSELEKLGLVPFVKTSGGRGIHVVVPTTGKLGWKPFHQASSEISSLIAAT
APETFTTVMGKDNRKKRIFIDFHRNARSATAAAPYSLRARTGMPASTPLGWNDLESIDAP
EDLNYSSLPGLVARSGDPWADIGDHARDLTTAISAKR
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggaaaagcttcgcacctaccggcagaagcgcgatttctccaggacgcgggaa
ccacctggcgcgttggcaggccacgatggcaaccgcttcgtcgtccataagcaccatgca
acggccgatcactacgacctgcgcctcgaactgggcggtgtgctgaaaagctgggccgtg
ccgcgcggcccctcgctcaaccccgccgacaagcggcttgccgtcgagaccgaggaccac
ccgatcgaatatatcgacttcgagggcctgatccccgagggggaatatggcggcgggccg
atgatcgtctgggacaccggcgtctgggcgccgatggaggatgccgaaaaggcgcttgcc
aagggcgccttcaagttccgcctgtcgggcgaaaagctgaagggcggctggatgctggcg
cggctgaagccgaagcccgacgagaacaagcacaactggctgctgttcaaggagcatgac
cccgccgccgacgagaaactcgatatcctccaggcacgccccgaaagcgtgaagaccggc
cggctcatcgaggaactggccggtccgccgaaaaagccgccatcgaagcccgccgacctc
aagcccggcaagcttgcgggtgcggtgcgggcaccgatgccggcgcggatcgaaccgcag
ctggccacagcggcgcccaagccgccgtcgggcgagggttggcttcacgagatcaagttc
gacggctatcgcaccatggtgcatctcgaaggcggcacggcaaagctgatcacccgcagc
ggcatcgattggacgaagcgctacggcaagctcgcggcggcctttcgcgacctgccgtgc
agcgaagccgtcatcgatggcgagatcgtggtgctcgacgacaagggcatcagccggttt
gcggccttgcaggacgcgctggccagcgggcatgacgagctcctggttttctacgccttc
gaccttctccatctcaatggctggaacctgacgggcacggaactcagcaagcgcaagggc
atgctggaaacgctgcttgccggccatgtcgacggccgctcggcgctgcagctcagcgga
catgtcgagggcgacggccaggcgctgtatgaccaggcgaccgaaatggggctcgagggt
gtggtgtccaagcgggcctcggcacattacacctccggacgctcgcacagctggtccaag
accaaggcactggacaaggacgacttcgtcatcgccggctacacgacatcgcaggcagcc
gaagggcttgcggccctcgctctcggcgaatgggtcgacggcgagctgcaatatcgcggc
aaggtcggaaccggcttcgacgctgagacgttgcagtcattgctgcaccggctggaagcc
ctgcgggaaggtgcggacaagctcgatggtgcgccgaaggaggtcatcccagtgcgtccg
gtattgaacgcccatatccactatgccaaccgcaccaccgacaacgcgctgcggcacgcc
gtgttcaagggcctgcgcgaggcggagctcaccgcgagtgccgccgcgccgcgcaagcgg
ctgatctcggatgccgatctcgccggcatttcgatcaccaatccgacgcggcgggtgctc
ggaaaggccgggccgaccaagctcgacgtcgcggtttattacgccgccatcggcgatttc
atgctgccccacatcctggggcggccggtatcgctgttccgctgtccgagcagccggccg
caggactgcttcttccagcgtcacgccttttcaggcatgccaccgacgatcgcttcgttc
gacaccaagaattccgagggcgagaccaagagctacatatcggtcgaggacgccaagggc
tatctcgcgctggcgcagttcggcgtcgtcgagttccacgcctggggcgccctgcgcaag
catctcgacaagcccgaccgtgtcgtcttcgacctcgatcctggcgaaggcatcggctgg
cgcgaggtcgtggaggccgccgttcacgtgcgcagcgagctggaaaagctcggtctcgtg
cctttcgtcaagacatccggcgggcgcggcatccatgtcgtggtgccgaccaccggtaaa
ctcggctggaagccattccatcaggcaagcagcgaaatctcgtcgctgattgcagccacc
gccccagagactttcaccaccgtcatgggcaaggacaaccgcaagaagcgcattttcatc
gacttccaccgtaatgcgcgcagtgcaacggcggccgcgccctattctcttcgggcacgc
actggcatgcctgcttcgacacctcttggctggaacgatctcgagtccatcgacgctccg
gaagatttgaactattcttcgcttcccggcctcgtggccaggtcaggcgatccctgggcg
gacatcggcgaccacgcccgcgacctgacgactgcaatcagtgccaaacgttag
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