Arvicanthis niloticus (African grass rat): 117724451
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Entry
117724451 CDS
T08817
Symbol
Col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
117724451 (Col13a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
anu00536
]
117724451 (Col13a1)
Glycosaminoglycan binding proteins [BR:
anu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117724451 (Col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
117724451
NCBI-ProteinID:
XP_034380156
EnsemblRapid:
ENSANLG00005026609
LinkDB
All DBs
Position
20:complement(27326887..27468383)
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AA seq
739 aa
AA seq
DB search
MVAERARKAAASGNRGPGELGAPGPGTVALAEQCARLPSPGCCGLLALALCSLALSLLAH
FRTAELQARVLRLEAERGEQQMEKAILGRVNQLLDEKWKFYSRRRREAPKMPPGCNCPPG
PPGPTGRPGLPGDKGAIGMPGRVGVKGQPGEKGAPGDAGMSIIGPRGPPGQPGTRGFPGF
PGPIGLDGRPGHPGPKGETGLVGPRGQPGPQGQKGEKGQCGEYPHREYPSGTLAALRSNP
IIPLKLLPLLNSVRLAPPPVIKRRTFQGEQSQAGIQGPPGPPGPPGPSGPLGHPGLPGPI
GPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGVPGIAVAGMKGEPGTPGAKG
EKGTAGSPGPLGQKGEKGDAGNAIGGGRGEPGPPGLPGPPGPKGEAGVDGQAGPPGQQGD
KGQPGAAGEQGPAGPKGSKGEPGKGELVDYNGSINEALQEIRTLALMGPPGLPGQTGPPG
PPGTPGQRGEIGLPGPPGHDGDKGPRGKPGDMGPAGPQGPPGKDGPPGMKGEVGPPGSPG
EKGETGQAGPPGLDGPTGEKGEPGDEGRPGAAGLPGPIGLPGFTGEKGEVGEKGDPGAEV
PGPPGPEGPPGPPGLQGVPGPKGEAGLDGSKGEKGSQGEKGDRGPLGLPGTPGPIGVPGP
AGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGL
DAPCPLGEDGLPVQGCWNK
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atggtggcggagcgcgcccgcaaagcggcagcctctggcaaccgcgggccgggggagctg
ggcgcaccagggcccgggacagtggcgctggctgagcagtgcgctaggctgccgagcccc
gggtgctgcggactgctggctctggcgctgtgctcgctggcgctcagcctgctcgcccac
tttcggaccgctgagctgcaggcccgagtgttgcgcctggaagcggagcgcggggagcag
cagatggagaaagctattttgggacgagtcaaccaactgctggacgagaaatggaagttc
tactcacgcaggcgccgggaggccccgaagatgcctccaggatgtaactgcccaccagga
cctcctggtcccactggaagacctggactcccaggggacaaaggtgccatcgggatgcct
gggcgcgtgggtgtcaaaggtcaaccaggcgagaagggtgcccctggagatgcggggatg
tccatcatcgggcctcgaggcccccctggccagcctggtaccagaggcttccctggattc
ccgggtcccattggtcttgacggcaggccgggccaccccggacctaaaggggagacgggc
ctggtgggtcctcgaggacagccgggacctcagggacaaaagggagaaaagggtcagtgt
ggagagtacccacacagggagtacccaagcggcacgcttgcagctctgcgctccaacccg
ataattcccctaaagctgttgcctctcctcaattcagtgcggctggctccacccccagtc
attaaaaggcggacctttcagggggaacaaagccaggctggcatccaaggccctccagga
ccaccgggtcccccaggaccaagtggtcctctaggacacccaggactgccagggcctata
gggccacctggtttacctggccctcctggaccaaagggagacccagggatccagggctat
catggccgcaagggagagcggggcatgccgggaatgccaggcaagcacggagccaagggg
gttcctgggattgccgtggctgggatgaagggtgagccagggacaccaggagccaagggt
gagaagggcactgcaggctcccctggccccctggggcagaagggagaaaaaggtgatgcc
ggcaatgccattggaggaggcaggggggagcctggccccccggggctccctgggccccct
gggccaaagggagaagctggtgtcgatggccaggctgggcccccaggacagcaaggagac
aagggacagccaggagcagctggggaacagggacccgctggccccaagggttccaagggt
gaacccggcaagggagagttggtggattataatggcagcatcaacgaggcgcttcaggag
atcaggacactggccttgatggggcctcctggtcttcctggacaaacaggcccgcccgga
cctccagggactccaggtcaaaggggggagattggactgccaggccctccaggacatgat
ggagacaaggggcctcgaggaaagccaggagatatggggcctgctggtcctcaaggaccc
ccaggaaaggatggacctccaggaatgaagggagaggtcgggcccccaggaagtccaggg
gagaaaggagagacaggacaagcaggccccccgggtctagacggcccaactggggagaaa
ggagaaccaggtgacgaagggaggcctggagcggcaggattgcctgggcccatcgggctc
ccgggattcacaggagagaaaggagaagttggggagaaaggcgacccgggagcagaggtt
cctgggccaccagggccagagggtcctccaggacctccgggcctccaaggtgttcctgga
ccaaagggagaagcaggtctagatggcagtaaaggagagaagggctcccagggagaaaaa
ggagaccgggggcctctgggattgcctggtactccaggaccaatcggggttccaggccca
gccggaccaaagggggaaaggggcagcaaaggcgacccagggatgacaggaccaacagga
gcagctgggctgcctggtttacatggaccacccggggacaaaggaaaccggggggaaagg
ggaaagaagggctctagagggcctaaaggggacaagggggaccaaggagcacctggactg
gatgccccctgcccactgggagaagacggcttaccagtccaaggctgctggaacaagtga
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