Amphiprion ocellaris (clown anemonefish): 111575408
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Entry
111575408 CDS
T06018
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce04510
Focal adhesion
aoce04512
ECM-receptor interaction
aoce04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111575408 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111575408 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
111575408 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aoce04147
]
111575408 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
aoce00536
]
111575408 (col4a6)
Exosome [BR:
aoce04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
111575408 (col4a6)
Glycosaminoglycan binding proteins [BR:
aoce00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111575408 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
111575408
NCBI-ProteinID:
XP_023136265
LinkDB
All DBs
Position
Unknown
AA seq
1716 aa
AA seq
DB search
MKFLVCALAVALAVGSAHGGTKFDEPCAGLDCSGGCRCNPEKGSRGRPGPLGEVGQSGPE
GPRGGPGPSGPKGEKGHIGVKGPSGPKGDKGPMGVPGFQGNDGVPGHPGQEGSRGSPGLD
GCNGTRGEPGAPGFGTGAPGFPGPTGPTGPKGQKGEPRYISDGNSISGLPGLPGADGQPG
IRGPDGPPGFSGPRGPEGYSGPPGPPGPPGLMGSRSDGYQGERGDKGDVGLPGPSGTPGD
GSLSGEQTLTIYKGDKGEPGPKGVRGFPGSPGRPGPFGYRGEYGEKGIPGYPGARGPPGF
NGPQGAPGQRGFRGNPGFPGQPGYIGPKGDQGEPGLPGPPAYINNLGTSVQGPPGDSGLG
GLPGIPGEQGAPGFAGAPGPPGVGGIFSGRPGSPGFPGTPGPKGEKGSPGAPTYGVEGLP
GSPGLPGPVGPPGPQGVSGISIPPCVIYPEGPVRPKGSPEGPATSFPGLPGSPGPRGDPG
NPGFRGVRGDPGDCGCLGGGASGLPGLPGVPGANGSPGFPGRKGEPGDGGSPGLNGVPGS
TGRAGERGGFGRKGEKGASYYPSLGLGVKGELGASGPRGPTGETGKPGRDGLPGFPGAPG
PPGDAGFGTVGEKGFPGFPGSKGRPGGPGEPGIGYAGTPGFRGETGDPGIPGLPGQPGLP
GPRGENSCGGVNDAGEGTGQVLPCVFPGEDGAPGVPGIPGRPGPKGEPGFPGGSGRPGFD
GAKGERGDPGFGGQPGPQGFPGPRGDAGVPGVPGQIFDGGRGKDGVPGRPGGKGQPGEVL
GATPGAPGQDGLPGIPGDKGLPGTPGGPGSPGFDARSGVPGLKGERGVDGLPGIPGLPGP
PGDPTGGIPGRPGAPGAKGLSGPPGCQGFPGRKGDRGDPGFPGPAGMKGTPGLPGTPGSP
GLRGPPGPPGPGTREGIPGIPGTKGERGFSGVMGFPGLPGRPGSPGFPGGKGVSGGPGRD
GFPGGPGFPGQKGERGYPGLPGLPGIPLPSGLVEKGDPGFPGSSGLPGFPGPRGDKGLPG
LPGRQGLPGLPGFAEQSKGQPGQPGFPGQPGTPGFPGPKGEAGIMGFPGMSGPRGDDGAP
GFPGNPGESGRPGGKGLPGESYGYPGGPGAKGQPGDSGFPGGRANDGAPGDNGFPGSPGF
PGAKGGPGEGGRPGIMGSPGFPGPKGMPGFPGRRGPDGTLGLPGGPGGPGSKGLPGSPGL
DGLNGLAGPKGLTGTPGGSAGGRPGAPGIPGAKGERGLSYPGGPGFSGSKGERGEPGVSG
LPGFPGRPGLPGAVIGSDIPGPLGDPGLPGLDGEYGFQGPPGPPGPPGPGTAQGDRGDSG
LPGFPGSPGRKGESGFPGGPGLPGSPGFKGERGETGFSGGPGLKGFSGDPGYFGGKGPKG
LRGPPGRKGFPGITLPPEVFRRPFGDQGFPGESGAPGTPGEPGQPGMPGRPGPNGRPGGV
GKLGRTGEPGLPGLVGDGGPPGFPGPTGEQGPPGNIGRPGTPGSVGRSFGIGFTLVKHSQ
NSQPPMCPQGMSKLWEGYSLLYVEGQEKAHNQDLGQPGSCLPKFSTIPFLYCSPNEICYY
ASRNDKSYWLSTTAPIPMMPVAEGQIQPYISRCSVCEAPSQAVAVHSQDMTIPNCPPGWR
SLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGAKGTCHYFANKYSFWLT
TVDPSQEFLYSPAQETLKGGQERSKVSRCQVCSKIL
NT seq
5151 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcctggtttgtgcgctggcggtggccttggcggtgggatctgcgcacggaggc
accaagtttgacgagccatgtgcaggtctggactgcagtggaggctgcaggtgcaacccg
gagaaaggcagcaggggtcgtcctggacctctcggtgaggtcggtcagagtggacctgag
gggccacgtgggggtccggggccttcggggcccaaaggagagaaaggccacatcggagtg
aaaggaccgtctgggcccaaaggagacaaagggccaatgggagttcccggatttcaagga
aacgatggagtacccggtcacccaggtcaggagggcagccgaggatcgcctggcctggac
ggatgtaacgggaccagaggggaacctggagctccgggcttcggaaccggagcgccgggc
ttccctggacccactggaccaactgggccgaaaggtcagaaaggagaacctcgatatatc
tccgatggcaacagcatctcgggtttaccaggtttaccaggagctgacggtcaacctggt
atcagaggtcctgatggtccacctggtttctcaggtcccagaggccctgaaggttactcc
ggcccacctggtcctcctggtcctccagggctgatggggagccgtagtgacggatatcaa
ggagagagaggagacaagggcgacgtgggtcttcccggacccagtggtactcccggcgac
gggtcgctaagtggcgaacaaacgctcactatctacaaaggagataagggtgaaccgggt
ccaaagggagtccgaggattcccaggaagtccaggtcggccgggacctttcggttatcgt
ggtgaatatggagagaagggcatccccggataccccggggcaagaggtcctccagggttt
aacggacctcagggcgctccaggacagcggggattcagagggaatccaggattccccggc
cagccaggatacattggacccaagggagaccagggagaaccaggactcccagggcctcca
gcttacatcaacaatctgggcacctctgttcaaggacctccaggtgactcaggtctcggt
ggcctcccaggcatccctggagagcagggagctccgggatttgcaggagctccaggcccg
ccgggagtaggtggcatcttctcaggtcgtcccggatccccaggttttcctgggaccccg
ggtccaaaaggagagaagggcagccccggtgcaccgacctacggcgttgaaggacttcca
ggctcccctggactccccggacccgttggccctcctggacctcagggcgtctctggcatt
tccattccaccctgcgtcatctaccctgaggggcctgtcaggcccaaaggttctcctgaa
ggcccagccactagtttccctggactgcctggaagccctgggcccagaggagatccgggt
aacccaggattcagaggcgtcagaggtgaccctggtgactgtggctgtctcggaggaggc
gcctcagggttgcctgggttacctggagttccaggagccaacggcagccccggattccct
ggacgaaagggtgaacctggcgacggtggttcacccggcttgaatggtgttccaggatct
actggtcgtgctggtgagaggggcggcttcggtcgtaaaggagagaagggggcttcgtac
taccccagcctgggtttgggggtgaaaggagagctgggagcttctggacccagaggacct
acaggtgaaacaggaaaacctggcagggatggactacctggcttcccaggagcccctgga
cctccaggcgatgctggcttcggcacagttggagagaaaggattcccaggattcccgggt
tccaagggacgccccggtggccccggtgagcccggcatcggctacgccgggacccccggg
tttcgtggagagaccggagaccctggtataccagggttgccagggcagccaggtttgcct
ggaccgagaggtgaaaacagctgtggaggggttaatgacgccggagagggaacgggccaa
gtgctgccttgtgtctttcctggtgaggatggagcccccggtgtgcctggtatacctgga
cgaccaggccctaaaggtgaaccaggttttcctggaggttctggacgtccagggttcgat
ggtgccaaaggagagagaggagaccctggttttggaggtcaacctggaccacaaggtttc
cctggacccagaggggacgctggagttccaggtgttccaggacagatcttcgatggcggc
agggggaaggacggcgttccagggcgtcctggaggcaaaggccagcctggggaagtgctg
ggagccacgcccggagctccaggacaggacggtttacctggaatccctggagacaagggt
ctacctgggacaccgggaggacctggatcacctggtttcgatgctcgttctggtgttcct
gggctgaagggggagcgtggtgttgacggtctgcctggtattcctggactccccggacct
ccaggtgatccgactggtggtattcccggtcggcctggagctcccggtgcaaagggactg
agcggacctccaggctgccaaggtttccctggtcgcaaaggagacagaggagacccaggt
ttcccagggcctgctggaatgaaaggaaccccaggactgcctggcactcctgggtcacca
gggctgaggggaccccccggacctccaggaccaggaactagagagggaattccaggaatc
ccaggaactaagggtgaaagaggtttctcaggagtaatgggtttccctggactaccaggt
cgtcccgggtctccaggatttcctggaggtaaaggggtttctggaggccctggaagagat
ggatttccaggtggacctggattccctggacagaaaggtgagagaggataccccggcctt
cctggcctacctggtattcctcttccatcagggctggtggagaaaggagaccctgggttc
cccggaagcagtggccttcctggcttccctggacccagaggtgacaaaggtctgccgggt
ctacctggacgtcagggtctgcctggacttcctggctttgctgagcagagtaaaggacag
ccaggacagcccgggttccctgggcaacccggaactccaggctttcctggaccaaaagga
gaagctggaatcatgggattccctggcatgtcgggaccacggggtgatgatggtgcacct
ggtttccctggcaaccctggagagtctggtcgacctggtggcaaaggcctacctggagag
tcttatggttatcctggagggccaggagctaaaggccagccaggagattcaggcttccca
ggtggtcgtgccaacgatggcgcccccggtgacaacggctttccaggaagtccaggcttc
cctggagccaagggtggtccaggtgaaggaggacggcctggaataatgggatctcctggt
ttccctggaccaaagggtatgcctggattcccaggaagaagagggccagatgggactctt
ggcctgcctggaggtcctgggggtccaggatccaaaggtttgcctggatctcctggttta
gacggacttaatggccttgctggacctaaaggcctcactggaactccaggtggaagtgca
ggaggtcgtcctggtgcccctggtattccaggcgcaaagggagaaagaggtctctcctac
cctggaggtccaggattctctggatcaaaaggagagagaggagagccaggtgtttctgga
ctccctgggttccccggtcggcctggacttcctggtgcagttattggatctgacatccct
ggacctcttggagaccccggccttcctggattggatggagaatatggtttccaaggtcct
ccaggtcctcctgggccgcctggtcctggaacagcccagggagacagaggtgactcaggg
ctgcctggattcccaggctcacccggcagaaagggagaatcgggattccctggaggccct
ggactccctggcagccctggttttaaaggagagcgcggtgagactggcttcagcggaggt
cctggtctcaaaggcttctctggtgaccctggttactttggaggcaaaggcccgaaggga
ttacgagggcctcctggtcggaagggtttccctggaatcacgttgccaccagaagtgttc
cgtcgtcccttcggagaccagggtttccctggcgaaagtggagcccctggtactcctgga
gaacctggtcagcctggcatgcccggacgtcccggtcctaacggtcgtcctggtggagtc
ggtaaacttggcaggaccggagagcctggtcttcctggactcgtcggtgatggtggacct
cctggcttccctggacccactggagagcaaggtccccctggtaacatcggtcgtcccggc
actcccggcagcgtcggccgcagtttcggcatcggcttcactctggtgaagcacagccag
aactcccagcctcccatgtgtcctcagggcatgagcaagctgtgggagggatacagtctg
ctgtacgtggaggggcaggagaaggcacacaaccaggacctaggtcaaccagggtcatgc
ctacccaagttcagcaccattcccttcctctactgctcccccaacgagatctgctactac
gccagtcgcaacgacaaatcctactggctttccacaaccgcacccatacccatgatgccc
gtggccgaggggcagatacagccgtacatcagcaggtgctcagtgtgtgaggctccatct
caggctgtggccgtccacagtcaggacatgaccatccccaactgtccccccggctggagg
agtctctggataggatactccttcctcatgcacacagcagccggtgctgagggtggcggt
caatccctggtctctcctggctcctgcctggaggatttccgcgcgactccgttcatcgag
tgcaacggggccaagggcacctgccactactttgccaacaagtacagcttctggctcacc
accgtggatcccagccaggagtttctctattcgccagcccaggagaccctgaagggaggc
caggagcgctccaaagtgagccgctgccaagtctgcagcaagatcttgtag
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integrated database retrieval system
