Aeribacillus pallidus: AP3564_05690
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Entry
AP3564_05690 CDS
T04993
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
apak
Aeribacillus pallidus
Pathway
apak03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
apak00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AP3564_05690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apak03021
]
AP3564_05690
03400 DNA repair and recombination proteins [BR:
apak03400
]
AP3564_05690
Enzymes [BR:
apak01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AP3564_05690
Transcription machinery [BR:
apak03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AP3564_05690
DNA repair and recombination proteins [BR:
apak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AP3564_05690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ASS89804
UniProt:
A0A223E3G9
LinkDB
All DBs
Position
1184639..1188241
Genome browser
AA seq
1200 aa
AA seq
DB search
MLDVNNFEYMHIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTDPGDTPLEKKQLLSEKEYRTYREKYGNAFQASMGAEAIKKLLQ
DINLDKEVEALKEELKSSQGQRRTRAIKRLEVMEAFRNSGNDPSWMVLDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVEKGLAHNIKSAKRKIERVHPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTMEREGAIGEGKIFRDPDEALIAYQNGHVHLHTRIAVH
AGSLKNETFTEEQNKKLLITTVGKLIFNEILPNSFPYINEPSTKNIQECTPDKYFVDPAQ
VDVREHIKNQEIIPPFKKGILGKIIAEVFKRFHITETSKMLDRLKDLGFKYSTKAGITIG
VSDIVVLAEKEAILKEAQAKVDNVLKQFRRGLITEDERYDRVISIWSAAKDTIQSKLMNS
LDKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIS
THGARKGLADTALKTADSGYLTRRLVDVAQDVIIREEDCGTDRGILARALKDGSEVIEKL
EERIIGRYARRSVIHPETGEVLVRENEMITEDIAAQIVNAGIEEVWIRSAFTCNTRHGVC
KKCYGRNLATGTDVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVQEL
FEARNPKGQAVISEIDGVVAEINEVRDKQQEIVVRGEVETRTYTAPFNARLKVAVGDRVE
CGQEITEGSIDPKELLKVKDILAVQEYLLREVQKVYRMQGVEIGDKHIEVMVRQMLRKVR
VIDSGDTDVLPGTLLDVHQFTEANKKVLLEGKRPATGRPVLLGITKASLETESFLSAASF
QETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMQLYRKIKPVMNKKSVDETISVE
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
ttgctggatgtaaataattttgagtatatgcacatcggtcttgcttcacctgataaaatt
cgttcatggtcatatggtgaagtgaaaaaaccagaaacgatcaactatcgtactttaaag
cctgaaaaagacggtttgttttgtgaacgtatattcggtccgacaaaagattgggaatgc
cactgcggaaaatataaacgggttcgctataaaggcgtagtatgcgatcgatgcggtgtt
gaggttacgcgagcaaaagtgcgtcgggagagaatggggcatatcgaacttgctgcccct
gtctctcatatttggtatttcaaagggattccaagccgtatgggactagttcttgacatg
tcacctcgagcattggaagaagttatttattttgcctcttacgtcgtgacagatcctggg
gacacaccacttgaaaagaaacagcttttatctgaaaaagagtatcgcacataccgcgag
aaatacggaaatgccttccaagcatcaatgggtgcggaagcaattaaaaaattattgcaa
gatatcaatcttgataaagaagtagaagcgttaaaagaagagcttaaatcttctcaaggc
cagcggcgcacaagagcgattaaacgccttgaagtgatggaggcattcagaaattccgga
aatgacccttcatggatggtgttggatgtacttcctgtcattccgcctgaattgcggccg
atggttcaattggatggcggacgctttgcaacttccgatttgaacgatttgtatcgccgt
gttattaaccgaaacaatcgtttaaaaagactgttggatcttggagcgccaagtatcatc
gtgcaaaatgagaaacggatgcttcaagaggctgttgacgcacttattgacaatggacgc
cgtggtcgtccagttactggaccgggaaatcgtccactgaagtcactctctcatatgctg
aaaggaaagcaaggacgcttccgtcaaaacctgttaggaaaacgggttgactactctgga
cgatccgttatcgttgtcggcccaaatctgaaaatgtatcaatgcggtttgccaaaggaa
atggcacttgagctctttaagccttttgtcatgaaggagcttgttgaaaaagggctggca
cataacattaaaagcgccaaacggaaaattgaacgcgtccatcctgaagtttgggatgtg
ttggaggaagtcattaaagaacatccggttctgcttaaccgggcaccgactttgcacaga
ttaggaatccaagcgttcgaaccgacgttagtcgaagggcgtgccattcgtctacatccg
ttggtatgtacagcctataatgctgacttcgacggtgaccaaatggctgttcacgttccg
ttatcggcagaagcacaagcagaagcaaggctgttaatgcttgcggctcaaaacatttta
aacccgaaagacggaaaaccggttgttacgccttcacaagatatggtgttggggaactat
tacttaacaatggaacgtgaaggagcgatcggagaagggaaaattttcagagatcctgat
gaggcgctcattgcctatcaaaacggccatgtacatttgcatacacgaattgcagtacat
gccggttccttaaagaacgaaacatttacagaagaacaaaataaaaagcttctgatcaca
acggtaggaaaattaatattcaacgaaatactgccgaattcgttcccgtatattaatgag
ccgtcaactaagaacattcaagaatgcacgcctgataaatattttgttgatccggcacag
gtagatgtgcgggagcacattaaaaaccaagaaatcattccgccatttaaaaaaggaatt
ttaggaaaaattattgccgaagtctttaagagattccatattactgaaacatcgaaaatg
cttgaccgcttaaaagatttaggctttaaatattcgactaaagccggaattacaatcggt
gtttctgatattgttgtgttggcggaaaaagaagcaattttaaaagaggcgcaagctaaa
gttgacaatgtcttgaagcaattcagacgcggattaatcactgaagatgagcggtacgat
cgtgttatctctatttggagtgctgctaaagacaccattcaaagcaagctgatgaattca
ttagataagcggaatccgattttcatgatgagcgattcaggagctcgcggaaatgcatct
aacttcacgcagcttgcgggaatgcgcggactgatggctaaccctgctggacgaattatt
gagcttccaattaaatcgagttttagagaaggtttgacagtgttagaatacttcatctcg
acccatggtgccagaaaaggtctggcagatacagcattaaaaactgctgactccggttat
ttaacacgccgccttgtagatgttgcgcaagatgtgattattcgtgaggaagactgcgga
acagacagaggaattttagcgagagcgctgaaagacggttcagaagttatcgaaaaactc
gaggaacggattatcggacgatatgcaagaagatcggttattcatcctgaaacgggcgaa
gtgcttgtcagggaaaatgaaatgattaccgaagacatagcagctcaaattgtcaatgca
gggatagaagaagtttggattcgctctgcattcacatgtaatacaagacatggtgtatgt
aaaaaatgttatggacggaacttggctaccggcactgatgtcgaagtaggcgaagcggta
ggaattatcgctgctcaatcgatcggagagccgggtacacagctgacgatgcgtactttc
cacaccggtggggttgccggcgacgacattacccaaggtttgccgcgtgttcaagaattg
tttgaagcccgtaatccaaaagggcaagcggttatttcagaaattgacggggtagttgct
gaaattaatgaagtgagagataagcagcaagaaattgtcgtccgcggtgaagtggaaaca
cgcacatacacggcgccatttaacgcccgcttaaaagtagctgtgggggaccgtgtagaa
tgcggccaagaaattacggaaggttcaatagatccaaaagaattgttgaaagtaaaagac
attttagccgttcaagaatatttgcttcgtgaagtgcaaaaagtgtacagaatgcaaggt
gtggaaatcggcgataaacatattgaagtaatggtgcggcaaatgttgcggaaagtccgt
gtcatcgattccggcgatacggatgttctgccgggaacactccttgacgttcatcaattt
acagaagcaaataaaaaggtgcttttggaaggaaaacgccctgcaacaggacgtccggta
ttgctcggtattacaaaggcatcgcttgaaacggagtccttcttgtctgccgcatcattc
caagagacaacacgcgtattaacggatgcggccattaaaggaaaacgggatgaactgtta
ggcttgaaggaaaatgttattatcggtaagcttgttccggctggaacaggaatgcagctc
tatagaaaaataaaaccggtcatgaataaaaaatccgttgacgaaacgatttcggttgaa
taa
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integrated database retrieval system
