Candidatus Puniceispirillum marinum: SAR116_0118
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Entry
SAR116_0118 CDS
T01207
Name
(GenBank) DNA polymerase III, epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
apb
Candidatus Puniceispirillum marinum
Pathway
apb03030
DNA replication
apb03430
Mismatch repair
apb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
apb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAR116_0118
03430 Mismatch repair
SAR116_0118
03440 Homologous recombination
SAR116_0118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
apb03032
]
SAR116_0118
03400 DNA repair and recombination proteins [BR:
apb03400
]
SAR116_0118
Enzymes [BR:
apb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SAR116_0118
DNA replication proteins [BR:
apb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SAR116_0118
DNA repair and recombination proteins [BR:
apb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SAR116_0118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF294
RNase_T
DUF294_C
CBS
Rv2179c-like
DNA_pol_A_exo1
DNApol_Exo
Motif
Other DBs
NCBI-ProteinID:
ADE38361
UniProt:
D5BP79
LinkDB
All DBs
Position
128075..130267
Genome browser
AA seq
730 aa
AA seq
DB search
MQPAKMQPATIPLSKIPLATMPLATMPLSEVPLVSLDLETTGLKPQTDRIVQIGAIGVDV
AVAADRAEDDHIEMLVDPGIAVPAASTAVHGINDAMLADAKPIAVALPALRSFINKRIIL
GYNIGFDLAFLTNEAKRQGLEWKWSGALCLRQLATVLLGPEAMLMIADLDALAAHYGVPV
IGRHTALGDATITAQVYHKMVPHLADKSIVTMADAWRVVADLDDIRQATARAGWIDVAGV
HSQPGSDKAVSWIDPYPYQHRISEIMLTDPVIISGDACVGDAARLMKQGGQECVFIGSDK
AHITGIVTERDIVHAMAVPIDEVTRARSIPLAEIMSAPLLTVSGSDYLHVGLGRMSRHDI
RFLGVIDEYGDLAGWISARQLLRQRVTKALTIGDQLETAQNGDDLASALQGLPALATSLI
AETVPGYQITAVISGQYRAALARASHLAARMMMETGKGTPPVDYVVLVLGSAGRDESLLA
ADQDHAIIYADSESASKKETQAWFEQLGSHISDLLDRGGIPYCKGGVMSRHARWCRSLSG
WRKAVRRWVKHARPEDILNVDIFFDFVAVHGNATLARDLDQVISSRLTRDSEFLKSLARN
TAGQASGRTIFGGLKTENGRFNVKANVLLPMVETIRVLAISRGITARTSTARAKALVQLD
DIPNEVQQLSEDIHIGLGLVLRQQSKDMAEGLPPVNTIDLRLLTKVELNILKAIVGRVGR
LQTLIQDVLF
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccagccaaaatgcaaccagccacgataccactttcgaagataccactggccaca
atgccacttgctacgatgccactgtccgaggtgccgcttgtgtcgcttgatctggaaacg
accggacttaaaccgcagactgaccggattgtgcaaattggtgcgatcggtgttgatgta
gctgttgcggctgatcgtgctgaggacgatcatattgaaatgctggttgatccggggata
gcggtgcctgccgcaagtaccgcggtgcatggcattaatgatgcgatgctggccgatgcc
aagcccattgctgtcgccctgccagctttgcgcagctttatcaataagcggatcattttg
ggctataatatcggctttgatctggccttcctgaccaatgaagccaagcgtcaggggctt
gagtggaaatggagtggtgcgttatgtctgcgccagctggcaacggttctgctagggccg
gaagcgatgcttatgattgccgatcttgatgcgctggcggcgcattatggggtgccggtt
attggccgccatacggcactaggcgatgctaccatcactgcacaggtttatcacaaaatg
gtgccgcatctggccgataaatcgattgttacgatggccgatgcgtggcgcgtggttgcc
gatctggacgatatccgccaagcgactgcaagggcagggtggatagatgttgccggtgtt
catagccagccaggcagtgacaaggccgtatcatggattgatccctatccatatcagcac
cggatcagcgaaatcatgctgaccgatccggttattataagtggtgacgcctgtgttggt
gacgccgcccgcctgatgaaacagggcgggcaggaatgtgttttcatcggcagtgacaag
gcgcatataacgggcatcgttaccgagcgcgatattgttcatgccatggcggttccgatt
gatgaggtcacgcgtgcgcgatcaatcccgctggctgaaattatgtcggcgccattattg
accgtatcgggatcggattacctgcatgtcgggctagggcggatgagccgccatgacata
aggtttctgggtgtgatcgatgaatatggtgatctggcagggtggatttcggcacgtcaa
cttctgcggcagcgtgtgaccaaggccttgaccataggtgatcagctggaaaccgcccag
aatggtgatgatctggcgtcagccttgcaaggcttgccggcattggcaacgtctttgatt
gccgaaacagtgcccggatatcagataacagcggtgattagcggtcagtatcgggcggca
cttgcccgtgctagccacctggccgcgcgcatgatgatggagactggcaaaggcaccccg
ccagtagattatgtggttctggtattaggatcggctgggcgtgatgaaagcttgcttgcc
gccgatcaggatcatgcgatcatttatgccgatagtgaatcggcatccaagaaagagacg
caggcatggtttgaacagcttggtagccatatatcggatttgctggataggggcgggatt
ccctattgcaaaggcggggtgatgtcgcgccatgcgcgatggtgccgatcattgtcggga
tggcgcaaggcggtgcgacggtgggtcaaacatgcccgtccggaagatattctgaatgtt
gatattttctttgattttgttgccgttcacggtaatgcaacgttggcacgggatcttgat
caggtgatttccagccgtctgacgcgggacagtgaatttttgaaatcattggcgcgcaat
acagccggacaggccagcgggcgcacgatctttggcgggctgaaaacagaaaatggacgc
tttaatgtcaaagccaatgtgctgttaccgatggttgaaaccattcgtgtgctggccatt
tcccgcggtattacagcgcgcaccagcaccgcccgagcaaaagcgctggttcagcttgat
gatattcccaatgaagtacaacaattatccgaagatattcatatcgggcttggtctggtt
ttgcgccagcaaagcaaggatatggctgaaggtttgccgcctgtaaatacgatagacctg
cggctgttgacgaaggtggaacttaacattctaaaagccatagtcgggcgggtggggcgt
ttgcaaacgctgattcaggacgtgttgttctaa
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