Anas platyrhynchos (mallard): 101800336
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Entry
101800336 CDS
T02816
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
apla
Anas platyrhynchos (mallard)
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
apla00536
]
101800336 (COL13A1)
Glycosaminoglycan binding proteins [BR:
apla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101800336 (COL13A1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
101800336
NCBI-ProteinID:
XP_038037439
EnsemblRapid:
ENSAPLG00030002543
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Position
6:complement(3672680..3773058)
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AA seq
859 aa
AA seq
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MLEEKSWKGVGEAAFDRGCVAPPRTGDGERCCRLPLLLGSGLPGVSLLSLVLSLLLYFRT
SDLQSRVSHLEADRPTQLPAWLSADQMETAILGRVDQLLDEKLKFHLPRHREVRDTHQRC
NCPAGPPGPTGRPGLPGDKGAMGIPGRPGLKGQPGEKGAPGEAGMSIIGPRGPPGQPGTR
GFPGFPGPIGLDGKPGHPGQKGEMGAAGPRGQPGPPGQKGEKGQCAEYPHRLLPLLNSVR
LAPPPVIKRRTFQGEQGQAGIQGPPGPPGPPGPSGPAGPEGTPGQPGPIGPPGRVGEPGK
PGRDGKGLPGPPGPKGDPGIQGYPGRKGEAGMAGLPGAHGLPGASGPKGEKGDAGIKGER
GMPGLPGRHGMKGAPGLAAAGMKGEPGTPGEKGQPGVPGRMGPPGLPGKRGQRGEKGRAG
DPGLPGLPGLKGEKGNSENALAGGKGEPGPPGLPGPPGPKGEAGDVGAAGPQGEKGEPGA
PGEQGPMGPRGPKGEPGKDEMMDYDGNISEALQEIRTLALMGPPGLPGVAGPPGPPGQKG
EIGLPGPPGHDGEKGPRGKPGEMGPPGPHGLPGKDGPPGIKGEPGHAGAAGQKGDKGEPG
QAGSPGLDGPTGEKGERGDQGMPGPSGLPGPIGLPGLTGEKGEPGERGDKGNPGESMSGP
PGPQGPPGPPGAQGLPGPKGEAGIDGMKGEKGAQGEKGDRGPLGLPGASGLDGRPGPPGT
PGPMGVSGPAGPKGERGSKGDPGVVGPMGPAGLPGLQGLPGDKGIRGLRGFKGEKGEPGL
PGLDGLDAPCPLVWRTFPFLHGGLLFCLGCSFPIPPSSCMPSRCMWQLLPHLSCPAFLTL
LLPGSVLSPWCYDSQLLPA
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgttggaggagaagagctggaaaggcgtgggcgaagcagcttttgacagggggtgcgtg
gctccccccaggaccggcgacggggagagatgctgccgcctccctctcctgctgggctcg
gggctgcccggcgtctccctgctctctctggtgctcagcctcctgctttactttcggacc
tctgatctgcagtcccgggtgtcccacttggaagcggacagacccacgcagctccctgcc
tggctctcagcagaccaaatggagacggctattttgggaagagttgaccaactgcttgat
gagaaattaaagtttcacttgccaagacatcgagaagttcgagacacacaccagcgatgc
aactgcccggcaggtccgcctggtcctacaggaagaccagggcttccgggagacaaaggc
gccatggggattcctggacggccgggactaaaagggcaacccggagagaagggtgctcca
ggagaagcaggcatgtccatcattgggccccgcggtccacccggacagcctggaactaga
ggttttcctggattcccgggccctattggcttggacggcaaaccgggccatcctggacag
aaaggggaaatgggtgctgcaggtcccaggggacaaccaggacccccgggacaaaaagga
gaaaagggtcagtgtgcggagtacccccacaggctgttgcctctcctcaattcagtgcgg
ctggctccacctccggtcataaagagacgcactttccagggcgaacaaggacaagcagga
atccaaggtcccccggggccccctggcccgccagggccctctggaccggctggacccgag
ggaaccccaggacagcccgggccaattgggccgcccggccgagtgggagaaccggggaag
cctggcagagatggaaagggcttacctgggcctcctggaccaaagggagaccctgggatt
cagggataccccggcagaaagggggaggcgggcatggcaggcctgcctggtgcgcacggc
ctccctggagcgtcgggccccaagggtgaaaaaggggacgccggcataaagggggagaga
ggcatgccagggctgccgggaagacacggcatgaagggagcccctgggttggccgccgcc
gggatgaagggtgagcctgggactccaggagaaaagggacagcccggagtcccagggagg
atgggccccccaggtttgccagggaaaagggggcagcggggggagaagggacgagctggt
gaccctgggcttcctggactccccggcctgaagggcgagaaggggaatagcgagaatgcc
ctggcaggagggaaaggggaacctggccccccaggtctgcctgggccccctggaccaaag
ggagaagctggtgacgttggcgctgcaggaccgcagggggaaaagggggagcctggcgca
ccgggagagcagggacccatgggcccacggggccccaaaggagagcccgggaaggatgaa
atgatggactacgatggcaacatcagtgaagctctccaggaaatacgaactttggccttg
atgggaccaccaggacttccgggtgtggctggacctccagggccaccaggacagaagggt
gaaattggcttgccgggtcctccaggccatgatggagaaaagggaccacgaggcaagcca
ggagaaatgggtccccctggccctcatgggctgccaggaaaggacggacctcctgggata
aagggagagcccggccatgctggggctgcagggcagaagggggataaaggagagccagga
caagccggctcaccgggtcttgatggccccactggagaaaaaggcgaacgaggtgaccaa
gggatgccaggaccatcaggactgccgggtcccattggacttccaggattgacaggagag
aagggcgagcctggggagcgtggagacaaaggaaacccaggagaatcgatgtctggcccc
cctggacctcaaggaccaccaggacctccgggtgctcagggcctcccgggaccgaagggg
gaagcagggattgatggaatgaaaggagagaagggtgcccagggtgaaaaaggagacaga
gggccactgggattacccggtgcttcaggtttggacggcaggcctgggccaccgggtact
ccaggaccaatgggggtttcgggaccagcaggaccaaaaggagaaaggggcagtaaagga
gatcctggtgttgtaggaccaatgggaccagcaggacttcccggtttacaaggtctgcct
ggtgacaaaggaatccggggtctccgaggttttaaaggcgagaagggtgagccggggtta
cctgggctggacgggctggatgccccgtgcccattggtatggcgtaccttccctttcctg
catggtggtttgcttttttgccttggttgttctttcccgatacctccaagtagctgcatg
ccctcgagatgcatgtggcagctccttcctcacctctcctgccctgccttcctcacactg
ctattgccaggatcagtcctttccccttggtgctatgattcacagctgctgccagcatga
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