Pseudarthrobacter phenanthrenivorans: Asphe3_28300
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Entry
Asphe3_28300 CDS
T01435
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
apn
Pseudarthrobacter phenanthrenivorans
Pathway
apn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
apn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Asphe3_28300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apn03021
]
Asphe3_28300
03400 DNA repair and recombination proteins [BR:
apn03400
]
Asphe3_28300
Enzymes [BR:
apn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Asphe3_28300
Transcription machinery [BR:
apn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Asphe3_28300
DNA repair and recombination proteins [BR:
apn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Asphe3_28300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ADX73946
UniProt:
F0MAL3
LinkDB
All DBs
Position
complement(3011243..3014752)
Genome browser
AA seq
1169 aa
AA seq
DB search
MVASSTSNNETANTADSTDGATRRLSFAKIHEPLDVPNLLALQTDSFDWLVGNERWQARV
AKAVEENDLSVATTSGLSDIFEEISPIEDFQGTMSLSFSDPEFADPKYTMAECKDRDATY
SAPLYVKAEFMNNNTGEIKQQTVFMGDFPLMTEKGTFVVNGTERVVVSQLVRSPGAYFER
AADKTSDKDIFTAKIIPSRGAWFELEIDKRDQVGVRLDRKRKQSVTVLLKALGWTEGQIL
EEFGQYDSMRATLEKDATETREDALLDIYRKLRPGEPPTVEAAQSLLDNLYFNSKRYDLA
KVGRYKINRKLGIDRSLGDKEASVLHVEDIVAMIKFLVALHAGEKTIKGTRDGQEVDLRV
EIDDIDHFGNRRIRAVGELIENQVRTGLSRMERVVRERMTTQDVEAITPQTLINIRPVVA
AIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCP
IETPEGPNIGLIGSLASYGRINPFGFIETPYRLVKNGVVSDDVQYLTADDEAEVLIAQAN
APLDENKKFAEETVLVRARGGGGEPVLVPAEDVEFMDVSPRQMVSVATALIPFLEHDDAN
RALMGANMQRQAVPLVRSEAPFVGTGMERAAAVDAGDVVIAKKAGVVTEVSAELVIMLND
DGTETNYRINKFARSNQGNCYNHRVLVNEGQRLEVGGIIADGPATDQGELALGKNLLVAF
MSWEGHNFEDAIILSQRIVAEDVLSSIHIEEHEIDARDTKLGAEEITRDIPNVSEEVLAG
LDERGIIHIGAEVEAGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLKVPHGE
SGTVIGVRVFDRDNDDELPPGVNQLVRVYVAAKRKITDGDKLAGRHGNKGVISKILPVED
MPFLADGTPVDIVLNPLGVPGRMNVGQVLETHLGWVAKTGWKIEGEPEWVKQLPNLPRES
GQTTVATPVFDGAREEEITGLLDSTNPTRDGERLINSSGKTRLFDGRSGEPFPDPISVGY
MYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE
LLTIKSDDIHGRVKVYEAIVKGENIPEPGVPESFKVLIKEMQSLCLNVEVLSTDGTTIEM
RDSDDAVFTAAEELGIDLSRAEPSSVEEV
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
ttggtcgcctcgagcacctctaataacgaaaccgctaacaccgccgacagcactgatggt
gccactcgccggctctcattcgcaaagattcacgaacctcttgacgttccgaatctgctt
gccctccagacggacagcttcgactggctggtcggaaatgagcgctggcaggcccgcgta
gcgaaggctgtggaagaaaacgatctcagcgtcgccaccacgtccggcctgtcggacatc
ttcgaagagatctccccgatcgaggacttccagggcaccatgtccctgagcttctccgat
ccggagttcgctgaccccaagtacaccatggccgagtgcaaggaccgggacgctacgtac
tcggctccgctgtatgtcaaggccgagttcatgaacaacaacacgggcgaaatcaagcag
cagaccgtgttcatgggcgacttcccgctgatgaccgagaagggcaccttcgtggtcaac
ggcaccgagcgtgtcgtcgtctcccagctggtccgttccccgggcgcctacttcgagcgc
gctgctgacaagaccagcgacaaggacatcttcaccgcgaagatcatcccgtcccgcggc
gcctggttcgagctcgaaatcgacaagcgcgaccaggtcggcgtccgcctcgaccgcaag
cgcaagcagtccgtcaccgtgctgctgaaggccctcggctggaccgaaggccagatcctc
gaagagttcggccagtacgactccatgcgcgcaacgctggagaaggacgctaccgaaacc
cgcgaagacgcgttgctggacatctaccggaagctgcgcccgggcgagccgcccaccgtc
gaggctgcccagtccctgctggacaacctgtacttcaactccaagcgctacgatctggcc
aaggttggccgctacaagatcaaccgcaagcttggcatcgaccgctcccttggcgacaag
gaagcctcggtcctgcacgttgaagacatcgtggccatgatcaagttcctcgttgcgctg
cacgccggcgagaagaccatcaagggcacccgcgatggccaggaagtggacctgcgcgtc
gaaatcgacgacatcgaccacttcggcaaccgccgcatccgcgccgtcggcgagctcatc
gagaaccaggtccgcaccggcctgtcccgcatggagcgcgttgtccgcgagcgtatgacc
acccaggacgtcgaggccatcacgccgcagaccctgatcaacatccgccccgttgttgca
gccatcaaggagttcttcggaacgtcccagctgtcgcagttcatggaccagaacaacccg
ctctcgggcctgacccacaagcgccgcctgtcggccctgggcccaggtggtctgtcccgt
gaccgcgccggcatggaagtccgtgacgtgcacccgtcccactacggacgtatgtgcccc
atcgaaacccctgaaggcccgaacattggcctgatcggttcgctggcttcctacggacgc
attaacccgttcggcttcatcgagaccccttaccgcctggtcaagaacggcgtcgtttcc
gacgacgtccagtacctgacggccgacgacgaggctgaggtgctgatcgcccaggccaac
gcgccgctggacgagaacaagaagttcgccgaagagaccgtcctggtccgtgcccgtggt
ggtggaggcgagcccgtcctcgttcccgccgaggacgtcgagttcatggacgtttccccg
cgacagatggtgtctgtggcaacggccctgatcccgttcctcgagcatgacgatgcaaac
cgcgcactcatgggtgccaacatgcagcgccaggccgtgccgctggtccgctccgaggcc
cccttcgtgggcaccgggatggagcgcgccgcagccgtcgacgccggtgacgttgtcatc
gcgaagaaggccggtgtggtcaccgaggtttccgccgagctcgtcatcatgcttaacgac
gacggcaccgagaccaactaccgcatcaacaagttcgcccgctccaaccagggcaactgc
tacaaccaccgtgtcctggtgaacgaaggccagcgcctggaagttggcggcatcatcgcc
gacggcccggcaacggaccagggcgagctcgccctcggcaagaacctgctcgtggcgttc
atgtcatgggaaggccacaacttcgaggacgccatcatcctctcgcagcgcatcgttgcc
gaggacgttctttcctccatccacatcgaggagcacgagatcgatgcccgcgacaccaag
cttggtgccgaggaaatcacccgtgacatccccaacgtgtccgaggaagtcctggcgggc
ctggacgagcgcggcatcatccacatcggtgccgaggttgaagccggcgacatcctggtc
ggaaaggtcacccccaagggtgaaaccgagctgaccccggaagagcgcctgctgcgcgcc
atcttcggtgagaagtcccgcgaagtgcgcgacacctccctgaaggtgccccacggcgag
tccggcaccgtcatcggcgtgcgcgtcttcgaccgcgacaacgacgacgagctgcccccg
ggcgtcaaccagctggtccgcgtctacgtggctgccaagcgcaagatcaccgacggcgac
aagctcgccggccgccacggcaacaagggtgttatctccaagatcctccccgtcgaggac
atgcccttccttgccgacggcacccccgttgatatcgtcctgaacccgctgggtgtcccg
ggccgtatgaacgtgggacaggtgctcgagacgcacctcggctgggttgccaagaccggt
tggaagatcgaaggcgagcccgagtgggtcaagcagctgccgaacctgccgcgcgagagt
ggccagaccactgttgccacgccggtgttcgacggcgcccgcgaagaggaaatcacgggc
ctgctggactccaccaacccgacgcgtgacggcgaacgcctgatcaactcctccggcaag
acccgcctgttcgacggccgctccggcgagccgttcccggatccgatctcggtcggctac
atgtacatcctgaagctccaccacctggtggacgacaagatccacgcgcgctccaccggc
ccgtactccatgatcacgcagcagccgctgggtggtaaggcacagttcggtggccagcgc
ttcggtgaaatggaagtgtgggcgctcgaagcttacggcgccgcctacacgctccaggaa
ctcctcacgatcaagtctgacgacatccacggccgcgtgaaggtctacgaggccatcgtc
aagggcgagaacatccccgagccgggcgttcccgagtccttcaaggtcctgatcaaggaa
atgcagtcgctgtgcctgaacgtggaagtcctctccacggacggaaccacaattgaaatg
cgtgactctgatgacgcagtcttcacggctgcggaggaactgggtatcgatctgtcccgt
gcagagcccagttccgtagaagaggtctaa
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