Arcobacter porcinus: APORC_0101
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Entry
APORC_0101 CDS
T06395
Symbol
recJ
Name
(GenBank) single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
apoc
Arcobacter porcinus
Pathway
apoc03410
Base excision repair
apoc03430
Mismatch repair
apoc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
apoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
APORC_0101 (recJ)
03430 Mismatch repair
APORC_0101 (recJ)
03440 Homologous recombination
APORC_0101 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apoc03400
]
APORC_0101 (recJ)
DNA repair and recombination proteins [BR:
apoc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
APORC_0101 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
APORC_0101 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
APORC_0101 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
CobU
Motif
Other DBs
NCBI-ProteinID:
QEP39740
UniProt:
A0A1C0AX47
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All DBs
Position
complement(90952..92520)
Genome browser
AA seq
522 aa
AA seq
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MQKITKQTLFSILNARHLNNPYSKLASIPSPDNFKDIKKASQRVKEAINKNEKITIIGDY
DVDGVVSTTIMLEFFNSLGVKVDYIIPNRFEHGYGLSPKIAQKIENGLVITVDNGISSIE
ASKILKSKDIDLIITDHHTVGDVLPYAFAIINPKQKDCSFEFKEICGAQVAWYFCAAIKK
ELGANIDLSSYLDLLSLAIIADIMPMTSLNYTMVKQGLKKMKTSNREAFKILNQNIQKSI
LVSDDVGFVIAPKLNSAGRMDDATIALDFLLSKNKDRAFESLALLDELNSYRKTLQEEIT
KKAQSSINSDDKAIVVWGENWHEGVIGIVASKLSNAYKKPAFVFSIKDGIAKGSARANSQ
LNLYDLIQNASDILLGFGGHKNAAGISLLSSNLDEFNSIIQNSLEDNELELHEEQENLGE
VDIASVDLEFLEIIESFEPYGLENSKPIFKVSKANLIKCELLGRDKNHLKLTLSSSDGSL
FEAVKFNDSNLNLDKELSFIVSISKNEFRGTIKPQFLIQEFI
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaataacaaagcaaacgcttttttctatattaaatgcaagacatttgaataat
ccttattcaaagcttgcatctattccttctcctgataatttcaaagatatcaaaaaagca
tcacaaagagtaaaagaagctattaataaaaatgaaaaaatcactattattggtgattat
gatgttgatggtgtagtttctactacaattatgcttgaatttttcaattctttaggtgta
aaagttgattatataattccaaatagatttgaacatggctatggattatcgccaaaaatt
gcacaaaaaatagaaaatggattggtaattacagttgataatggaattagttcaattgaa
gcatcaaaaatattaaaatctaaagatattgatttaataataactgatcatcatacagta
ggagatgttcttccttacgcatttgcaatcataaatccaaagcaaaaagattgttctttt
gaatttaaagagatttgtggagcacaagttgcttggtatttttgtgcagcaataaaaaaa
gaacttggtgcaaatattgatttaagctcttatcttgatcttctttctttagctattatt
gcagatataatgccaatgactagccttaattatacgatggtaaaacagggtttaaaaaag
atgaaaacttcaaatagagaagcttttaaaatattaaatcaaaatattcaaaaatctatt
ttagtatctgatgatgttggatttgttattgctccaaaacttaatagtgctggaagaatg
gatgatgctactattgctttagattttttactatcaaaaaataaagatagagcttttgaa
tctttagctttattagatgaattaaactcttatagaaaaactcttcaagaagagattaca
aaaaaagctcaaagttccataaatagtgatgataaagctattgttgtttggggagaaaat
tggcatgaaggcgtaattggaattgttgcctcaaaactttcaaatgcttataaaaaacca
gcttttgtattttccataaaagatggtattgcaaaaggtagcgcaagagccaattctcaa
ctaaatttatatgatttaattcaaaatgcttcagatattttattaggttttggtggtcac
aaaaatgcagcaggaatatctttacttagttcaaatcttgatgagtttaactctattatt
caaaactctttagaagataatgaactagagctacatgaagagcaagagaatttaggagaa
gtagatattgcaagtgtagatttagagtttttagagattattgaaagttttgagccttat
ggtttagaaaattcaaaaccaatttttaaagtatcaaaagcaaatttaataaaatgcgaa
cttttaggaagagataaaaatcatttaaaattaactcttagtagtagtgatggttcattg
tttgaagctgtaaaatttaatgatagtaatttaaatttagataaggaactaagtttcata
gtttcaatatctaaaaatgagtttagaggtacaattaaacctcaatttttaatacaagag
tttatttag
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