Amycolatopsis pretoriensis: MUY14_17835
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Entry
MUY14_17835 CDS
T08335
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aprt
Amycolatopsis pretoriensis
Pathway
aprt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aprt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MUY14_17835 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aprt03400
]
MUY14_17835 (ligD)
Enzymes [BR:
aprt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MUY14_17835 (ligD)
DNA repair and recombination proteins [BR:
aprt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MUY14_17835 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
UOX92386
LinkDB
All DBs
Position
complement(4099724..4100644)
Genome browser
AA seq
306 aa
AA seq
DB search
MAGSRITVRVGERQLTLSNLEKVLYPRHGFTKGEVLDYYTRIAPVLLPHIRDRAMTFVRF
PDGVDGGSFFEKDVSRHVPEWVRTARLAVGGRGGDPEIVAYPLINDLPELVWAANLAALE
LHVHQWTVEPGDERSTPDRLVFDLDPGPGATVVDCSRVAERLHDVLTGHGFTPVAKTSGS
KGMQVYAGVETDDPGAPSRYAKALADRLAAETPGLVVARMTKNLRPGKVFIDWSQNNPFK
TTVAPYSLRGRDEPTVSTPVTWDEVRACRHVSHLRFTAGDVLARVEDTGDLFADLDRTRA
PIPAFG
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
gtggcgggcagccggatcacggtgcgggtgggcgaacggcagctgacgctctccaacctc
gagaaggtcctctacccgcgccacggtttcaccaagggcgaggtgctcgactactacacg
cgcatcgcgcccgtgctgctgccgcacatccgcgaccgggcgatgacgttcgtgcgcttc
cccgacggcgtcgacggcggttctttcttcgagaaggacgtctcgcggcacgtccccgag
tgggtccgcaccgcgcgcctggccgtcggcggccgcggcggcgaccccgagatcgtcgcg
tacccgctgatcaacgacctgcccgagctcgtctgggcggccaacctcgccgcgctcgaa
ctgcacgtccaccagtggacggtcgagcccggcgacgagcggagcaccccggaccggctg
gtcttcgacctcgatcccggtcccggcgcgacggtcgtcgactgctcccgggtcgccgaa
cgcctccacgacgtcctcaccggacacgggttcacgccggtggcgaagaccagtggctcc
aagggcatgcaggtctacgcgggcgtcgagaccgacgaccccggcgcgccttcgcggtac
gcgaaagcgctggcggaccggctcgccgccgagacgccgggcctcgtcgtggcgcggatg
acgaagaacctgcgtcccggcaaggtgttcatcgattggagccagaacaacccgttcaag
accacggtggcgccgtactcgctgcgcgggcgcgacgagccgaccgtgtccaccccggtc
acgtgggacgaggtgcgcgcctgccggcacgtttcgcacctccggttcaccgccggagac
gtcttggcgagggtcgaagacaccggagatcttttcgcggatctggaccgcacccgggct
cccattcctgcgttcggctga
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