Acetobacter pasteurianus IFO 3283-01-42C: APA42C_19870
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Entry
APA42C_19870 CDS
T01818
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
apw
Acetobacter pasteurianus IFO 3283-01-42C
Pathway
apw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APA42C_19870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apw03019
]
APA42C_19870
03009 Ribosome biogenesis [BR:
apw03009
]
APA42C_19870
Enzymes [BR:
apw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
APA42C_19870
Messenger RNA biogenesis [BR:
apw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
APA42C_19870
Ribosome biogenesis [BR:
apw03009
]
Prokaryotic type
rRNA processing factors
APA42C_19870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BAI18331
LinkDB
All DBs
Position
2077469..2080462
Genome browser
AA seq
997 aa
AA seq
DB search
MLIQGQLWELCTPSNFYRTPVYIRRKSPCSVVPCHLRGSTTQAGHRRTGVFLFMSKRMLI
DATHAEETRVVVMDGNRLEDYDVESAAKKQLKGNIYLARVVRVEPSLQAAFVEYGGNRHG
FLAFSEIHPDYYQIPVSDREKLLALQAEEEALLENAENGADEDDASDNAEAQASDTEQDT
EASDTSAQSEDEGSEREERSANKQDAPDYVGGETDTGEEALIQKRIARFLRNYRIQEVIR
RRQVLLVQVVKEERGNKGAALTTYVSLAGRYCVLMPNALRGGGVSRKITSVADRRRLRDI
VSDLNLPRGMAMIVRTAGAQRPGPEITRDCEYLLHLWDDIREHTLQSVAPALIYEEASLV
KRAIRDVYTREISEIVVDGENGWKAARDFMRMLMPQHAEKVRLWNKENQPLFTHYHVEGH
LDAMFSPVVSLRSGGYLVINQTEALVAIDVNSGKATSQRNIEETAFRTNQEAADEVARQL
RLRDLAGLIVIDFIDMESRRHNSMIERRLKDALRHDRARIQIGSISHFGLLEMSRQRLRP
SVAEAAFMPCPHCNGTGMMRSIESSALHVLRAVEEEGARRRSSAITVHVAADIAFYILNN
KRDWLTQIEQRHQMEVLFAADNTLPAPEVRIERRQHARPPRIQPPLPPVENIVADEVIAA
APEIPATEPTAIQETVDNSDEPRRRRRRRRRRRSDQDTNQTPATQTQSDAIAPEADEAAP
IAASENTVEPVAEADAETNLVPGRRRTRRSRVRKPAETRTEIHVDIEEGPAPRPTMPAWE
GPTPANPFGGAPDIFELLENTARQQVAETAPAPKAADVQEETAIVPVEVTKTEEVAPQPV
AATTEEPEKTEEAPKPRRRRTRKKVEPAAEENVEQAETPVAAPADEAASAEAEPPKKPVR
RRTTRRKTAAKDETAETAETSTAETAEEKPKKTTRRRTTRKKAEPAPATEAASETVAAPA
PKEAATEASEKEEAIVQPIVIEDSPPATRRRTGWWKK
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atgctgatacaggggcagttgtgggaactttgtacgccttccaatttttatcgcacgcct
gtttatatccgccggaagagcccctgctccgtcgtgccatgccatttacgcggcagcacc
acacaggctggccaccggcgcaccggagtttttctttttatgtcaaagcgtatgctgatc
gacgcaacacacgcggaagaaacgcgcgttgttgtgatggacggaaatcggcttgaagat
tacgatgttgaatctgctgccaaaaagcagcttaaagggaacatctaccttgcccgcgtt
gttcgcgtagagccaagcctgcaggccgcctttgtagaatatggcggcaaccgccacggc
tttctggcttttagcgaaatccatcctgattactatcagatcccggtttctgaccgcgaa
aagcttctcgctctacaggctgaagaagaagctctgctggaaaacgccgaaaacggcgct
gatgaagatgatgcatctgacaatgcagaagctcaggcatctgacacggagcaggacaca
gaagcttctgacacctctgctcagagtgaagatgaaggctctgaacgggaagaacgttct
gccaataagcaggatgcacctgactatgtaggcggcgaaacggatacgggtgaagaagcc
cttattcagaaacgcattgcccgattcctgcgcaactatcgcattcaggaagttatccgc
cgccgccaggtgctgctggtgcaggtggttaaggaagaacgtggcaacaagggcgcagcc
ctgaccacctatgtttctctggctggccgctattgtgtgcttatgcccaatgccctgcgc
ggtggtggcgtttcacgcaagattacatctgtggcagaccgccgccgcctgcgggatatt
gtttccgatcttaacctgccccgcggcatggccatgattgtgcgcacagcaggtgcccag
cgccccggcccggaaattacgcgagactgcgaatatctgctccatctatgggatgatatc
cgtgagcataccctgcaatccgttgcacctgcgctgatttacgaagaagcaagcttggta
aaacgcgctatccgcgatgtttacacccgcgagatcagcgaaattgtggtggatggggaa
aacggctggaaggccgcgcgggacttcatgcggatgctgatgcctcagcacgcagaaaaa
gtccggttgtggaacaaggaaaaccagcccctgttcacacactaccacgtggaagggcat
ctggatgccatgttctcccccgtggtgtctctgcgctctggcggttatctggttatcaac
cagacagaagccttggttgccattgacgtcaactccggcaaagccaccagccagcgtaat
attgaggaaacagccttccgcaccaatcaagaagcagcagatgaagtggctcgccaactg
cgcctgcgtgatctggctgggctgattgtgatcgacttcattgatatggagtcccgccgt
cacaattccatgatcgaacgccgcctgaaagatgccctgcggcatgatcgggcacgtatc
cagattggctccatctcccacttcgggttgctggaaatgtcacgccagcggctgcggcca
tctgtggcagaagctgccttcatgccctgcccgcactgtaatggcacaggcatgatgcgc
agcattgaaagctccgccctgcatgttctgcgcgcagtggaagaagaaggcgcacgccgc
cgttcttccgccattaccgtgcatgttgctgcggatattgctttctatatcctgaacaac
aagcgggactggctgacccagattgaacagcgccaccagatggaagtgctgtttgccgca
gacaacacactgccagctccggaagttcggatcgaacgccgccaacacgcgcgcccacca
cggattcagccgccattgccgccggttgaaaacattgtggctgatgaagttattgcagcc
gctccagaaattccggcaacagaacctactgccattcaggaaacggtcgataattcggat
gagccacgccgtcgccgtcgtcgtcgtcgccgtcggcggagtgatcaggataccaatcag
actcccgcaacacagacgcagtctgatgccatcgcgccagaagcagatgaagccgcacca
attgcagcttctgaaaacacagtagaacctgttgcagaagcggatgcagaaaccaatctg
gtgccgggtcgacgcagaacccgccgctcccgcgtgcgcaaaccggctgaaacgcgcaca
gaaatccacgtagatattgaagaaggccctgcgccacggcccactatgccagcatgggaa
ggcccaacaccggccaatccatttggcggtgcgccagatattttcgagctactggaaaac
acggcgcgccaacaggttgccgaaacagcaccggcccccaaagcagccgatgttcaggaa
gaaaccgcaatcgtgcctgttgaagtaacgaaaacggaagaggttgcacctcagcctgtt
gctgccacaactgaagaaccagaaaaaacggaggaagcgcctaaaccacgccgccgccgc
acacgtaagaaggtagaacccgcagcagaagaaaatgtcgaacaggctgaaactcctgta
gcagcaccggcagatgaagctgcctctgctgaagcagaaccgcctaaaaagcctgtacgc
cgtcgcacaacccgccgcaaaacagcggcaaaggatgagactgcggaaacagcagaaact
tccacagcggaaactgccgaggaaaagccgaagaaaacaacacgtcggcgcaccacacgt
aaaaaggcagaacccgcacccgctacggaagctgccagcgaaactgtagctgctcctgca
cctaaagaagccgcaaccgaggcttctgaaaaagaagaagctattgttcagcctatcgtg
attgaagatagcccgccggcaacgcgcagacgtaccggttggtggaagaagtaa
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