Aquimarina sp. AD1: D1815_22940
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Entry
D1815_22940 CDS
T05625
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
aqa
Aquimarina sp. AD1
Pathway
aqa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aqa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D1815_22940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aqa03019
]
D1815_22940
03400 DNA repair and recombination proteins [BR:
aqa03400
]
D1815_22940
Enzymes [BR:
aqa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D1815_22940
Messenger RNA biogenesis [BR:
aqa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D1815_22940
DNA repair and recombination proteins [BR:
aqa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
D1815_22940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HHH
Motif
Other DBs
NCBI-ProteinID:
AXT58471
UniProt:
A0A3A9WSK6
LinkDB
All DBs
Position
5325523..5327730
Genome browser
AA seq
735 aa
AA seq
DB search
MSLNETDLQGALKKYFGFSQFRGLQEKVIESILGKQNTFVIMPTGGGKSLCYQLPALMCE
GTAIVVSPLIALMKNQVDAIRSISSEEGIAHVLNSSLNKSEVKRVKGDIVSGVTKLLYVA
PESLTKEEYVDFLKEQKISFLAVDEAHCISEWGHDFRPEYRNLRNIIKRIGEDIPIIGLT
ATATPKVQEDILKNLAMSNAKTFKASFNRPNLFYEIRPKTKNVDADIIRFVKQNSGKSGI
VYCLSRKRVEELAQTLEVNGVKAVPYHAGLDAKTRAKHQDMFLMEDADVVVATIAFGMGI
DKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAYYAYKDIEKLEKFMSGKPVAEQ
EIGHALLQEVVAFAETSISRRKFILHYFGEEFDEVTGEGADMDDNVRNPKKKHEAQEEVQ
LLLKVVNRTGEIYKSKDLVNTLIGKSNALIISHKTHEQPFFGTGKFREDKYWMALIRQVL
VSGYLKKDIETYGVIRITPEGRKFIESPVSFMMTEDHVYDQTKDDSIITAAKGVGKAGGT
DDRLVGMLKDLRKTVAKKLGVPPFVVFQDPSLEDMALKYPISIEELGNVHGVGEGKAKKY
GKEFVALISKYVDENDIMRPDDFVVKSTGANSGLKLYIIQNVDRKLPLDDIAAAKGMDMP
EFIKEMEAIVYSGTKLNITYWIDEILDEDQQEEIHEYFIEAENDKIDTAIEEFDGDYDDE
ELRLYRIKFISDVAN
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgagtttgaacgaaaccgacttacaaggagctttaaaaaagtactttggttttagtcaa
tttagaggattgcaggagaaggttatagaaagtattttaggaaaacaaaatacttttgtt
attatgcctacaggtggtggaaaatccctttgctaccagcttcctgccttaatgtgtgaa
ggaacagctattgtagtttctccgctaatcgcactaatgaaaaatcaagtagatgctatt
cgaagtatttcttctgaagaaggaatagcacatgtgttaaattcttccctcaacaaatcc
gaggtcaaaagagtaaaaggagacattgttagtggtgtaacaaaactgttatatgtggca
ccagaatctttgacaaaagaagagtacgtagatttcctaaaagagcaaaagatttctttt
ctggctgtggatgaagcccattgtataagtgaatggggacatgattttagaccagagtat
aggaatctaagaaatattattaaacgaataggagaagatattccgattataggattaaca
gcaacggcaacgccaaaagttcaagaagatattcttaagaatttagcgatgagtaatgct
aaaacatttaaagcgtcctttaatcgtcctaatttgttttatgaaatacgcccgaaaaca
aaaaatgtagatgctgatattattcgttttgtaaaacaaaatagtggcaaaagcggaatt
gtttattgcttaagcagaaaacgcgtagaagagcttgctcaaacactagaggtaaatggc
gtaaaagctgttccttaccatgcaggtttggatgctaagaccagagcaaagcatcaagat
atgttcttaatggaagatgctgatgtagtagttgctacaattgcttttggaatggggatc
gataaacccgatgtacgttttgtaatccatcatgatattcctaaaagtatagaaagttat
taccaagaaacaggtcgtgcaggtagagatggtggagaaggacactgtttggcgtattat
gcttataaggatattgagaagttagaaaaatttatgagtggtaaacctgttgcagagcag
gagataggacatgccttgttacaggaagtagtggcttttgccgaaacttctatatccaga
cgtaaatttatattgcattattttggtgaggagtttgatgaggttacaggagaaggagcg
gacatggacgataatgttcgtaatccaaaaaagaaacatgaagctcaagaagaagtgcaa
ctcttattaaaagttgtaaatagaacaggagaaatttataaatcgaaagacttagtaaat
acgttgatcggaaaaagtaatgcgcttattatatctcataaaactcatgaacaacctttt
ttcggaacaggtaagtttagagaagataaatattggatggcattgatccgacaagtgctc
gtttctgggtatttgaaaaaagatatagagacttatggtgtgataagaattactccagaa
ggaagaaaatttatcgaatcgcctgtgagttttatgatgacagaagatcatgtatatgat
cagactaaggacgattctattataaccgctgctaaaggtgtaggaaaagcaggtggcact
gatgatcgattagtaggtatgctaaaagatttaagaaaaactgttgccaagaaattagga
gttcctccgttcgtggtatttcaggatccatcgctagaagatatggcccttaaatacccg
ataagtatcgaggaattaggaaatgttcatggagtaggagaaggaaaagccaaaaaatac
ggaaaagagtttgtagcattaatctctaaatatgtagatgagaatgatattatgcgtcct
gatgattttgtcgtaaaaagtacaggagctaatagtggacttaagttatatattatccag
aatgtagatagaaaacttccgttggatgatatcgctgcagctaaaggaatggatatgcca
gagtttattaaagaaatggaagctattgtatatagtggtactaaacttaatattacatac
tggatagatgaaatattagatgaagatcaacaagaagaaattcatgaatattttatagag
gcggaaaatgataaaatagatacggcgattgaagagtttgatggagattatgatgatgaa
gaattaagattgtatcgtatcaaatttattagtgatgtagctaattaa
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