KEGG   Ascochyta rabiei: EKO05_0002350
Entry
EKO05_0002350     CDS       T09445                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
arab  Ascochyta rabiei
Pathway
arab03020  RNA polymerase
arab03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:arab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    EKO05_0002350
  09124 Replication and repair
   03420 Nucleotide excision repair
    EKO05_0002350
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:arab03021]
    EKO05_0002350
   03019 Messenger RNA biogenesis [BR:arab03019]
    EKO05_0002350
   03400 DNA repair and recombination proteins [BR:arab03400]
    EKO05_0002350
Transcription machinery [BR:arab03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     EKO05_0002350
Messenger RNA biogenesis [BR:arab03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     EKO05_0002350
DNA repair and recombination proteins [BR:arab03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      EKO05_0002350
SSDB
Motif
Pfam: SHS2_Rpb7-N S1
Other DBs
NCBI-GeneID: 62220265
NCBI-ProteinID: XP_038793022
LinkDB
Position
3:complement(join(2308223..2308249,2308306..2308464,2308517..2308597,2308651..2308899))
AA seq 171 aa
MFFLKELEKTIQLHPSYFGPLIRSHIHKELLQKEEGSSTGKYTIVCILDSFDISDGQVMP
GSGSAEYTVHYKAIVWRPYKGEVMDGIVTSILPSGFFVDCGSLQAFVGRNMIPSDIKFEG
NAAPPQWTDGADQVIEKGTNIRIKIKGIRSEVDKMYAVGTMKEDYLGPLSQ
NT seq 516 nt   +upstreamnt  +downstreamnt
atgttcttcctcaaagagctcgagaagacgatccagctacatccctcatactttggccct
ctcatccgttcgcacattcacaaggagcttttgcaaaaggaggaaggctcgagcacagga
aagtacacaattgtgtgtatactggactcgttcgacatctcagatggccaggtgatgcct
ggctctggctctgccgagtacaccgttcactacaaggccattgtatggcggccgtacaag
ggcgaggtgatggatggtatagtaacctcgatccttccgtctggcttctttgtggattgc
ggctctctgcaagcctttgttggacgtaacatgattccctcggacatcaaatttgagggt
aacgcagcacctccacagtggaccgatggcgcagaccaggttattgagaaaggcacaaat
atccgcattaagatcaagggtattcgatctgaagtcgacaagatgtacgctgtaggaacg
atgaaagaggattatctgggccctctgtcgcagtag

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