Arthrobacter sp. Hiyo4: AHiyo4_07520
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Entry
AHiyo4_07520 CDS
T08405
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
arty
Arthrobacter sp. Hiyo4
Pathway
arty03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arty00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AHiyo4_07520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arty03019
]
AHiyo4_07520
03400 DNA repair and recombination proteins [BR:
arty03400
]
AHiyo4_07520
Enzymes [BR:
arty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AHiyo4_07520
Messenger RNA biogenesis [BR:
arty03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AHiyo4_07520
DNA repair and recombination proteins [BR:
arty03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AHiyo4_07520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
zf-TFIIB
Motif
Other DBs
NCBI-ProteinID:
BAS07330
LinkDB
All DBs
Position
568917..571124
Genome browser
AA seq
735 aa
AA seq
DB search
MVDTQNAALLSVSPGSPSATKSQALEVLRELVGHPAADFHDGQFEAIEALVDGGRRALVV
QRTGWGKSAVYFVASLLLRRRGAGPTLIVSPLLALMRDQVAAAARAGVRAAAINSANQLD
WDTVREQLAADEVDVLLVSPERLTNPAFRENQLPELIRRTGLLVIDEAHCISDWGHDFRP
DYRRIADLITQLPESVPVLATTATANSRVVHDIEEQLGAGVLTIRGTLGRDSLRLGVLAL
PNSRERLGWLLTHLADLPGSGIIYTLTVSAAEDTARLLAEAGHTVQAYTGRTDPADRERA
EQMLKDNQVKALVATSALGMGFDKPDLGFVVHLGAPSSPVAYYQQVGRAGRGAANADVLL
LPGSEDRDIWQYFATASMPSEDKATAVLTALAEAGTAVSTVALEARVDLRRTPLELLLKV
LAVDGAVERVGGGWRSTGQPWIYDAERYRRIAEARVDEQDSMLIYQDTAGCRMEYITSVL
DDETAHPCGRCDNCAGRWFRADIAEDATAAAGQTLTRAGGVLEARLQWPSGMDRLGVPVK
GKIKPDDGLADGRVLARLTDLGWGGALRELFAAGAADRPVDPAMLQACVQVLREWATGDG
RNPGWSGAGRPAAIVSMPSRSKPELVRSLAQGISEIGRIPYLGELDLGHGGPTGSRGGNS
AYRLAGVWDRVMVGPELAAAMATLRGQGVMLIDDLVDSRWTVTVAGRALRQAGRGLFFRS
CLPRPADLCAGLPVQ
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atggtcgatacccagaacgccgcccttctttccgtttcccctggctcaccgtccgccaca
aaaagccaggcgctggaggttctccgcgaacttgtggggcatccggctgcggatttccac
gacggacagtttgaggcgattgaagcactggtcgacggcggccggcgggctttggtggtc
cagcgcaccggttggggaaaatcggccgtgtactttgtggcgtccctgctgctccggcgc
cgcggcgccggccccaccctgatcgtttcgccgctgctcgccctgatgcgggaccaggtg
gctgccgccgcccgcgccggagtgcgtgccgcggccatcaactcggcgaaccagctggac
tgggacaccgtcagggaacagctcgccgccgatgaagtcgacgtgctgctggtgtcgccg
gaacggctcaccaacccggccttccgtgagaaccagctgccggagctcatccggcggacc
ggcctgctggtgattgacgaagcccactgcatttcggactggggccacgacttccggccg
gactaccgccggatcgctgacctgatcacccaactgccggagtccgtgcctgtcttggcc
accaccgccacggccaactcgcgcgtggtccacgacatcgaggaacagctgggcgcgggc
gtcctcaccatccgcggaacccttggccgggattccctgcgcctgggtgtcctggcactc
ccgaattcccgcgaacggctgggctggctcctgacgcacctggccgatctgcccggcagc
ggcatcatctacacactgaccgtctccgccgcggaggataccgcccggcttctcgctgaa
gccggacacacagttcaggcctataccggcaggaccgatcccgcggaccgggagcgcgca
gagcagatgctcaaggacaaccaggttaaggcgctggtggccacctcggcgctcggcatg
ggcttcgacaaaccggaccttggcttcgtcgtccacctcggggcaccgtcctccccggtg
gcgtactaccagcaggtgggccgcgcgggccgtggcgcggcgaatgcagatgtgctgttg
ctgccgggttctgaagaccgggatatctggcagtactttgccaccgcgtccatgccgtcc
gaggataaagccacagcggtgctgacagcgctggctgaagccggaactgccgtctcaacg
gtggcgttggaggcccgggttgacctccgccgcaccccgctggagctgctgctgaaggtc
ctggccgtggacggcgccgtggaacgtgtcggcggcgggtggcgttccaccggccagccg
tggatctacgacgccgagcgttaccgccggatcgccgaggccagagtggacgagcaggac
tccatgctgatctaccaggacaccgcgggttgccggatggaatacatcacctcggtcctc
gacgacgagacagcgcacccctgtggccggtgcgataactgcgccggccgctggttccgg
gccgatatcgccgaggacgccacggcagcggcgggccagaccctcacccgcgccggcggt
gtcctggaagcacggctgcagtggcccagcggcatggaccgcctgggcgttccggtcaag
ggcaaaatcaagcccgacgacggactggcggacggccgggtgctggcaaggctgaccgat
ctcggctggggcggggcgctgcgggaactcttcgcggccggggccgcggaccgtccggtg
gatcctgccatgctgcaggcctgtgtccaggtcctgcgggaatgggctaccggtgacggc
cggaacccgggctggagcggtgccggccggccggccgcgatcgtcagcatgccctcccgc
agcaagcccgaactggtccgttcccttgcccagggaatttcggaaatcggcaggatcccc
taccttggggagctggacctgggacatggcggacccactggaagccgcggcgggaacagt
gcgtaccggctggcgggcgtctgggaccgcgtcatggtgggcccggaattggcggccgcc
atggcaacacttcgtggccagggcgtgatgctgatcgacgacctcgtggacagccggtgg
accgttaccgtggctggacgcgccctgcgccaggcggggcgggggctgttcttccgctcg
tgcttgcccaggccggctgacctctgcgccggcctgccggtgcagtga
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