Aneurinibacillus soli: CB4_00297
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Entry
CB4_00297 CDS
T05174
Symbol
mfd_1
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
asoc
Aneurinibacillus soli
Pathway
asoc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
asoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CB4_00297 (mfd_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asoc03400
]
CB4_00297 (mfd_1)
Enzymes [BR:
asoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CB4_00297 (mfd_1)
DNA repair and recombination proteins [BR:
asoc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CB4_00297 (mfd_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
BAU26192
UniProt:
A0A0U5AW69
LinkDB
All DBs
Position
complement(261317..264874)
Genome browser
AA seq
1185 aa
AA seq
DB search
MKGLIETFMHDDEFATIVSGYERGLREQLASGLGGSARQVFFAALYQKMARPLVIVTHNM
YQAQKVHDDLSQFIPGEELWLYPANEMVLSEVAISSPETLSQRLEVLNALSSGKRGILIV
PYAGVRRSVVPVEKWRQARITFTVGNEIDREIFLEKMIALGYERVEMVEARGEMSVRGGI
IDIFPAYMMHPIRIELFDTEIDSIRTFDISDQRSIENLQEIVVGPTREVFGERDVFLAAA
EKVEAHMKETLPKIKAVQVKELIAEKVGWEIEQLRQGHAFTGIYKYISFLYSGRHTLLEY
MSGQPLLIVDEPSRIVESAAQMEKDEAEWKTALIQEGEFLPDIEVSHPIEEILSSKKRPV
LHVALFLRQVPKTSPQNIVNFNCKTMQNFHGQMNVLKGELERWKKSNMTVIFCAADEERA
RRLEHVFHDYEMEADIVLQPEQALISKQPVITLGNLQGGFELPMQHLVVITESEVFTQKQ
RKASKTRKNLSNAERIKSYTELAVGDYVVHVNHGIGKYLGIETLDINGIHKDYLHIKYAG
NDKLYVPIEQIDQVQKYVGSEEKEPKVYKLGGTDWKKVKNKVRASVQDIAQDLIKLYAER
QQARGYAFSKDGEEMREFEAMFPYDETDDQLRTICEIKEDMEMPRPMDRLLCGDVGYGKT
EVAIRAAFKSVMDGKQVAILVPTTILAQQHYETFRERFADYPVTISVISRFRTRKEQTQT
LKGVKDGTVDIVIGTHRLLSKDVIFKDLGLLIVDEEQRFGVTHKEKLKRLKTNVDVLTLT
ATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYSAGLVREAVERELAREGQVYFL
YNQVQGIDQMAEQIRMLVPEAKVVVAHGQMSETELESVMLSFLEGESDVLVSTTIIETGV
DIPNVNTLIVTNADRMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKE
FTELGSGFKIAMRDLSIRGAGNLLGAEQHGFIASVGFDLYSQMLKDAIEELKGEPQKEEE
VHPEITITIDAFIPSDYIQDGKQKIEMYKKFAAASSFSDLDDLTEELIDRFGTIPHSVMN
LLHVAKLRVYARENRIVEIAQKGEAVLLTFHEDQTTKVDWSILYDLEGSLSRRISLSRQA
QQVVVSLKVKGLQSEEIVEQLETFFVQFDAVKKKTEGEEAADVAK
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtctgatagagacctttatgcatgatgatgagtttgcaaccatcgtcagcgga
tatgaacgaggattgcgcgaacagcttgcatcaggacttggaggttcggcgcgtcaggtg
ttttttgccgcgctgtatcaaaaaatggcgcggccacttgtcattgtcacgcacaatatg
tatcaagcacaaaaagtacatgacgatttaagccagttcataccgggagaagagttatgg
ctatatccggcaaatgaaatggtcctctctgaagtggcaatttcaagcccggaaacgctc
agccagcgtcttgaggtgttgaatgcgctctcgagtggaaagcgcggtattttgattgtg
ccgtatgcaggcgtacgtcgctctgtggtgccggtggagaaatggcgccaggctcgaatt
acgtttacagttggcaatgagatcgatagagaaatctttctggagaaaatgattgcactc
gggtatgagcgagtggaaatggtagaggcgcgcggtgagatgagtgtgcgcggcgggatc
atagatattttcccggcttatatgatgcatccgattcggattgaactgtttgatacggag
atcgattcgatccgtactttcgacatcagtgaccagcgttctattgagaatttgcaggag
attgtagtaggaccgacccgcgaagtgttcggggagcgagatgttttcctggctgctgcc
gagaaagtagaagctcatatgaaagagacgcttccgaagattaaggcagtacaagtgaaa
gaattgattgccgagaaggtcggctgggaaatcgagcagttgcgtcaggggcatgccttt
actggaatctataaatatatttcatttttatattcggggcgccatacattgctagagtat
atgagcggccagcctctgcttattgtggatgagccttcccgtattgtagagtctgctgct
cagatggagaaagacgaagcggaatggaaaacggcactcattcaggaaggagaattcctt
cctgatatagaggtgtcccatcctatagaagagattctttcatccaaaaagcgtccggtt
ctacatgttgctctattcttacgacaggttcctaaaacaagtccacaaaatattgtgaac
tttaattgcaaaaccatgcagaatttccacggtcagatgaatgtactaaaaggtgagcta
gagcgctggaagaaatcgaatatgaccgttatattttgtgcggcagatgaagaacgcgcc
cgccgcctcgagcatgtatttcacgactatgagatggaagccgatattgtgctccagcca
gagcaggcgctcataagtaagcagccagttattacgcttggcaatctgcagggcggattc
gagcttccgatgcagcatctggttgtgattacagaaagtgaagtattcacgcagaagcag
cgcaaggcatccaaaactcgtaaaaatttgagtaatgctgagcggatcaaaagctacaca
gagcttgcagttggcgattacgttgtacatgtcaatcatgggatcgggaaatatctcggc
attgaaacgcttgatattaacgggattcataaagattatctgcatattaaatatgcaggc
aatgacaagctgtacgtaccgattgaacagatcgatcaggtacagaagtatgttggcagt
gaagaaaaagagccgaaggtatataagctcggcggcacagactggaagaaagttaaaaat
aaagttcgagcatccgttcaggatattgcgcaggatctaatcaaattgtatgcggagcgc
cagcaggcaagaggttatgcattcagcaaagacggagaagaaatgcgggagttcgaagcg
atgttcccgtatgatgagacagatgaccagctgcgcacaatttgtgagataaaagaagat
atggaaatgccccgtccgatggatcgtctgttgtgtggagatgtgggctatgggaagacg
gaagtggccattcgcgctgcctttaagtcagtgatggacggcaagcaggtagctatactt
gtgccgactacgattttggcacagcagcattacgagacattccgggagcgttttgcggat
tatccggttactatttctgtgattagccgcttccgtacccgcaaggaacagacgcagacg
ctcaaaggcgtgaaagacggaacggttgatattgtcatcgggacacaccgcctgctgtcc
aaggatgtcatattcaaagatcttggcctgcttattgtggatgaagaacaacgattcggt
gtgactcacaaggaaaagctgaagcgtctgaaaacgaacgtcgatgtactgaccctgacg
gcaacgccaatcccgcgcacgcttcatatgtccatgctcggtgtgcgagatctgtccgtc
attgagacaccaccggagaatcggttcccggttcagacgtatgtaatggaatatagcgca
ggtcttgtacgggaagcagttgagcgcgaacttgcacgtgaaggccaagtgtatttcttg
tataatcaggtacagggtattgaccagatggccgagcagattcgaatgcttgtgccggag
gctaaagtagtggtggctcacggccaaatgagtgaaacggagcttgaatccgtcatgctc
agctttctggaaggagaatcagatgtactagtcagtaccaccattattgaaacaggtgtt
gatattccaaatgtaaacacattgattgtcacgaatgccgaccgaatgggtttatcccag
ttgtatcagctacgagggcgtgttgggcgctccaatcgaattgcttatgcgtattttacg
tatcagcgtgataaggtgctgacagaagtagcagagaaacgtctgcaggcgattaaagaa
ttcacggagcttggttccggttttaaaatcgcgatgcgggacttgtccattcgcggtgcg
ggtaacctgctcggcgctgaacagcatggctttatcgcatcagtcggatttgatttatat
agccagatgcttaaggatgccatcgaagagcttaaaggtgaaccgcaaaaagaagaagag
gttcatcctgagattacgattaccattgatgcgtttattccgtccgattacattcaggac
ggtaaacaaaaaatcgaaatgtacaagaaatttgcagccgcttcttcttttagcgatctc
gatgatttgacagaagagctgatcgaccgtttcggaacgattccgcacagcgtgatgaat
cttctgcatgtagctaagttgcgtgtatatgcacgtgagaaccgaatcgtagagattgca
cagaagggggaagctgtcctcctgacattccatgaagatcagacgacgaaagtggactgg
agtattttgtacgacttggaaggatcgctgtcgcgccgcatttctttatcacgtcaggca
cagcaagtagtagtcagcctgaaggtgaaagggctacaatcagaagagatcgtagaacaa
ctggaaacattttttgtgcaattcgatgcagtaaaaaagaaaacagaaggcgaggaagca
gcagatgtggcaaaataa
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