Agrobacterium tumefaciens S33: AWN88_19940
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Entry
AWN88_19940 CDS
T04213
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ata
Agrobacterium tumefaciens S33
Pathway
ata03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ata00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWN88_19940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ata03019
]
AWN88_19940
03400 DNA repair and recombination proteins [BR:
ata03400
]
AWN88_19940
Enzymes [BR:
ata01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AWN88_19940
Messenger RNA biogenesis [BR:
ata03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AWN88_19940
DNA repair and recombination proteins [BR:
ata03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AWN88_19940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AMD61597
LinkDB
All DBs
Position
linear:1811168..1813009
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AA seq
613 aa
AA seq
DB search
MRHPPDTEEEAVNDDPLQILKTVYGYDSFRGRQAEIIRHVTSGNNAFVLMPTGGGKSLCY
QIPALARKGMGLIVSPLIALMVDQVAALRQAGVRAEALNSDLSPEERRALWQAMRSGNVD
ILYAAPETLLKPEVLEALQSIDLSLIAVDEAHCLSQWGHDFRPPYRQLDLLIERFPNTPR
MALTATADEPTRAEILGHLDIKEDDAFIAGFDRPNIRYAIMEKDNPRAQLRRFLKDREDQ
SGIVYCLSKRKVEETAAWLREEGRDALPYHAGMDKAAREENQTRFQHGEAVIIVATVAFG
MGIDKPDVRFVVHIDLPGSIEAYYQETGRAGRDGLPSDVLMLYGYEDIALRNRFIEESDA
ADQRKHMERQKLDALLGLAETASCRRQILLSYFGDRCEPCGNCDTCAEPPDLFDGAIAAQ
KLLSCIYRTGERFGQAHVIRVLLGLEDERISRFGHDRITTYGIGKEHDNRTWRAILRQLV
ALRLIDVDLSGHGGLSISADGRQFLREKPSLMLRIPSAPRAARQQAPRNAASAALPEADR
SLFEVLRAKRMEIARAQNVPPYVIFHDKTLIELAAAKPVSVKDMAQIPGVGDTKLERYGP
AFLEAIMQHAASD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgcgccatcctccagacacagaagaagaagccgtgaacgacgatccgttgcaaatcctc
aagaccgtttacggctatgacagcttccgtgggcgacaggcggaaatcattcggcatgtc
acgtccggaaacaacgccttcgtgctgatgccgacgggtggtggaaagtcactgtgttac
cagattccggcgctcgcccgcaaaggcatggggctgatcgtctcgccgctgatcgcgttg
atggtcgatcaggtggcggcgcttcggcaggccggcgtgcgggccgaggcactcaactcc
gacctttcgccagaagagcggcgtgcgctctggcaggccatgcgctccggaaatgtcgat
attctctatgctgcgccggaaacccttctcaaaccggaggttctggaggcacttcaatcc
attgatctgtcgctgatcgctgtcgacgaggctcactgcctttcgcaatgggggcacgac
ttccgtccgccctatcgccaactcgatctgcttatcgagcgttttccgaatacgccgcgc
atggcgctgacggcaacagccgacgaacctacccgcgccgaaatcctcggccatctggat
atcaaagaggacgatgccttcatcgcgggtttcgatcgtcccaatatccgctacgcgatc
atggaaaaggataatccccgcgctcagctcagacgttttctgaaagaccgggaagaccaa
agcggcatcgtttactgcctgtcgaaacgcaaggtcgaggaaacggccgcctggctgcgc
gaagaaggacgtgacgcactgccttatcatgccggcatggacaaagccgcgcgggaggag
aaccagacccgtttccagcacggcgaagccgtcatcatcgtcgcgacggttgccttcggc
atgggcatcgacaaaccggacgtacgttttgtcgtccatattgatctgcccggcagcatt
gaagcctattatcaggagaccggccgcgcaggccgtgatggtctcccgtccgacgtgctc
atgctctacggttatgaagacattgcgttgcgtaatcgtttcatcgaggaatcggacgcc
gcggatcagcgcaaacatatggagcggcagaagctcgacgcgctgctcggtcttgcggag
acggcaagctgccgcaggcagatattgctttcctatttcggcgacagatgcgagccatgc
ggcaattgcgatacatgcgcggagccgccggatctgttcgacggtgccatagccgcacaa
aaactgctttcctgtatttaccgcaccggagaaagattcggacaagcccatgtcatccgc
gtcctgctgggcctcgaagacgaaaggatttcccgattcgggcatgatcgcataaccact
tatggcatcggtaaggagcacgacaatcgcacttggcgcgccattcttcgccagctggtc
gcgttgcgactgattgatgtcgatttgtccggacatggcggattgtccatttccgccgac
gggaggcagttcctgcgtgaaaaaccgtcgctgatgctgagaataccatctgcgccccgt
gcagcccggcagcaggcgccgcgaaacgccgcatcggccgccctgccagaggctgaccgc
agcctcttcgaggttctgcgcgcaaaacgcatggaaatcgctcgagcacagaacgttccg
ccttatgtgatttttcacgataagacgctcatcgagcttgccgccgcaaaacctgtctcc
gtgaaggatatggcgcagattccaggcgtgggggataccaaactggaacgttacggtccg
gcctttcttgaggcgatcatgcagcatgccgccagcgactga
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