Aethina tumida (small hive beetle): 109599324
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Entry
109599324 CDS
T06105
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
atd
Aethina tumida (small hive beetle)
Pathway
atd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109599324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atd03019
]
109599324
Enzymes [BR:
atd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109599324
Messenger RNA biogenesis [BR:
atd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109599324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
DUF6809
RRM_1
NCBP3
CYAA_C
Motif
Other DBs
NCBI-GeneID:
109599324
NCBI-ProteinID:
XP_019870862
EnsemblRapid:
ENSATDG00005000627
LinkDB
All DBs
Position
1:complement(join(71293473..71293539,71293595..71293877,71293937..71294062,71294125..71294354,71294409..71294813,71294867..71295178,71295234..71295426,71298342..71298360))
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AA seq
544 aa
AA seq
DB search
MDVTKSNFDQLLPAIKEAIKNCTFASIDCEITGLNVTKDINAFDTPEEYYIKVKKNCLEF
LVIQYGLSLFRYDKENNTFKQTTYNFYIFRKPINRNIPDQRFLCESNSIDFLTAQGFDFN
KLFKDGLSYLTSQEYEKFKSDLEEKKKNHIFTIQNENKDIIPIPDNLITFIEDVTKKLEN
FAESNETEMSLPRCGPFAKKLIYQVAEDKFENKLTLESRQVEKDRILFAVKQRPKEREQE
IFEKKHEDDFQQLEDYLGFSRVIQVLKDSKKLIVGHNLGLDLMHTIDKFVTPLPEDYEDF
KTCVQKIFPQVIDTKYMANSEPFKDLISSTVLKSLLNTVAQQPFKTIDTEIETGAEGYKI
GDNKEHKAGYVAFVTGYIFISMWRYLGIKADKSPKDTFKDFKLLKKVLNRIFTMNLVDNQ
YINLQGKDLNPSRDHVFYLTFPKDWKYNDIVELFSPFGPVFVSWLDDTSAYVSLQKKDQA
ALALNTLSQSDDSYTIMPFNKKFDFDNDNEGNTKKMRMTSLERLFNILTIFLLVSATWRC
LEML
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atggacgtcacaaaatccaattttgatcaactgctgccagcaataaaagaagctatcaag
aattgtacgtttgcaagtattgactgcgaaataactggcttgaatgttaccaaagatata
aatgcttttgatactcctgaagagtattatattaaagttaaaaaaaattgtcttgaattt
ttggttatacagtatggtttaagcctttttaggtatgataaagaaaataatactttcaaa
caaaccacctacaacttctacatatttagaaaaccaattaaccgtaatattccagatcaa
agatttctgtgtgagtccaatagcatagattttctcactgcacagggttttgattttaat
aaattattcaaagatggcctatcttatttgacttcacaggaatatgagaagttcaagagt
gatttggaagaaaagaaaaagaatcacatatttacaatccaaaacgaaaacaaagatatt
attcctatacctgataatttaataacgtttattgaggatgtcactaaaaaacttgaaaat
tttgctgaatctaatgaaacagaaatgtcactaccgaggtgtggtccctttgccaaaaaa
ttgatttaccaagtcgctgaagacaagtttgaaaataaattgacacttgaatctagacaa
gtggaaaaagacagaattttgtttgcagtcaagcaaagacccaaagaaagagagcaagaa
atatttgagaaaaaacatgaagatgactttcaacaacttgaggattatttaggtttcagt
agagtaatacaggttttaaaagattcaaaaaaacttatagtgggacacaaccttggcctg
gatcttatgcacaccattgataaattcgtgactcctttgcctgaggattacgaagatttt
aagacctgtgttcagaagatatttccacaagttattgatacaaagtacatggcaaattca
gaaccgttcaaagatctcatatcatcaacagtattaaagagtcttttaaatactgtggcg
caacaaccgtttaaaacaattgatactgaaattgaaactggggcagaaggctacaaaatt
ggtgataacaaagaacataaagctggatatgtcgcttttgtcactggttacatttttatt
tctatgtggagatatttgggaataaaagcggacaaatcgccgaaagacacgtttaaagat
ttcaaattgcttaaaaaggtattaaatcgtatctttaccatgaatcttgttgacaaccag
tacataaacctacaaggaaaagacttaaatccgtctcgagatcacgttttctatctaaca
ttcccaaaagactggaaatacaacgacatagttgaactgttcagtccattcggtcctgtc
tttgtttcttggttggatgacacatcagcctacgtgagtttacagaaaaaagatcaagcg
gctttagctttgaacacactatcgcagagcgacgacagctacactattatgccgttcaat
aaaaaattcgattttgataatgataatgagggaaacaccaagaaaatgcggatgaccagt
ttagaacgtctttttaatattcttactatcttcttgctggtatctgcaacttggaggtgc
ctggagatgctgtaa
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