KEGG   Aethina tumida (small hive beetle): 109607373
Entry
109607373         CDS       T06105                                 
Name
(RefSeq) collagen alpha-1(V) chain-like
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
atd  Aethina tumida (small hive beetle)
Pathway
atd04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:atd00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    109607373
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:atd00536]
    109607373
Glycosaminoglycan binding proteins [BR:atd00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   109607373
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2
Other DBs
NCBI-GeneID: 109607373
NCBI-ProteinID: XP_049820885
EnsemblRapid: ENSATDG00005005022
LinkDB
Position
3:complement(join(20995428..20995787,20995844..20996028,20996079..20996302,20996355..20996587,20996645..20996860,20996922..20997083,20997139..20997408,20997601..20997978,20998101..20998424,20998484..20998735,20998816..20999067,20999121..20999282,20999338..20999643,20999700..21000158,21000213..21000323,21000392..21000466,21000523..21000747,21000800..21000993,21001047..21001548,21002348..21002510,21004222..21004378,21004442..21004669,21007041..21007131))
AA seq 1842 aa
MCVRTRIKAEVLICVFIVLVPLIEETASQSDEIVDLITEARLYSQPTGVTRILGRCANES
NGREPEIDEWAYRLGERAQISLSTGDYFSKGFPTNFSVLIVARPTPGQIYSLFTLYSEEG
DEQLSISVGRDVSVYYEDTDEMPLEGNHIPFELSMDDGKWHRLAFSFKGDSVTLIYDCAN
TITKSLARESTSKLSTSGIMNIGFQLADEGYYEGDVQLLKIAPTPDEAYNLCTKHAPDCT
GSISGSSHSSSYHYSSSGGGGGYSYSSSSRSSSSTSGGSNGHYSGSGSESGVKFSSSSQS
GTSVGSSSGESSGSSFGSVAVGGGSAGTLGIKVEGGGNFNGAGANVGIGEGSSGGGSIVT
RNHASMNSSGRGEAGYEEEIDFEGLNKFIQGAGGTYISQEGSESVDFDQNVMGGLRGDID
YESNTDVPEVNTINNTTDILTETEWANTESPDGYDMSPVGPEYGNSPSPYYPNRGPSGPH
GYPGPPGPPGPPGPKGEPGRDGLGGTDGIPGPPGHVFMIPLNTQGNEKGPDSQTETFRQM
LSQHMMAMRGVEGPMGLTGVPGPQGPPGPEGLKGEPGEIGEPGPRGEMGPQGLPGREGRR
GRPGRDGERGLTGPPGNKGEQGLIGLPGLPGDKGERGERGVPGEQGLPGHDGMQGEEGPP
GLPGLPGEQGPRGFSGPRGIPGLPGPPGIPGSEGPPGSKGHPGPIGQPGAPGQPGSSGAP
GPPGPQGLLGPPGIMGPMGKPGIPGLPGAEGLPGNNGSPGLPGRKGEPGLPGHQGSIGFP
GARGVKGDEGKRGATGEKGDKGDRGLEGEKGEPGLKGEIGAQGPQGIPGLEGPEGPKGFD
GPRGETGPAGPPGEKGKQGIQGFVGYPGSTGEKGDKGATGRLGPPGEKGERGNPGSPGER
GEQGPRGFRGYRGKRGQDGLQGPKGDTGQPGPPGPSGEVGPPGSEGPRGLSGPPGSPGSH
GKDGVPGPPGERGPPGEAGSPGKPGEPGVIGPQGPIGEPGPIGEPGTPGPPGIPGEAGVP
GEAGKEGAPGPPGPPGKPGISGPTGLPGFPGERGHNGPPGPPGLKGDEGPAGPAGPQGDK
GAQGEPGKEGSPGPEGRRGPPGPPGAGGAKGERGEAGPPGVSGRDGLPGQRGLPGAPGPV
GPPGEDGDKGDIGPPGEKGFKGAQGEPGPVGSPGPQGIRGEIGPVGPPGEKGPPGEMGRQ
GSKGEDGPNGLPGPAGPAGPQGLPGPPGQKGEIGDFGQRGPPGPAGTPGEQGERGPKGAE
GLPGPRGPEGLQGPKGDDGPPGPIGPPGKDGRPGETGPQGQKGEEGKVGLQGPPGPRGPI
GPEGSKGSAGPPGFPGPPGEPGLTGLKGEPGKDGEQGKQGEAGAPGDTGLPGPIGPPGPA
GRPGPEGPAGLQGNTGLPGEKGDKGTIGAPGLQGQTGSQGIPGPQGLPGLRGSPGPAGET
GPPGNPGIPGEQGKIGETGPTGPKGDRGRRGPKGHRGDPGLNGLKGDRGDKGQKGERGDR
GPEGPKGDIGPVGPIGFKGNDGPAGLPGMEGPPGPKGQEGVAGMKGESGPPGPPGPPGPP
AEMPLLPPEILFQKELSRSKRDLGDLINEYEEIVETTKKTDTSGDENVNTNNDDNHKFLD
MYNEIYRMRRDLEGTKKPVGTRDNPVRTCRDLYYGHPQFNDGWYWIDPNLGMKDDAIYVY
CNMTAEGETCVSPDKHSSSMPNIPWRKESPKKEWYSNLRGGFRITYEAVGTVQMNFLRLL
SSEVYQNFTYSCINSAAWFNQNTHKFDMAIKLLGQNEHEFTHTNSKNIVIEDKCKFRKNK
AETIFEIRTKKMQQLPIIDFLPVDYGAPNQAFGFSVGAVCFK
NT seq 5529 nt   +upstreamnt  +downstreamnt
atgtgcgttcggactagaattaaggctgaagtcttaatatgtgtgtttattgtattagtg
ccgttgattgaggaaactgcatcgcaaagtgatgaaatagttgaccttataactgaggcg
aggctgtattctcaaccgactggagtgaccagaatattgggaagatgcgctaacgaatca
aatggaagggaaccagaaatagacgaatgggcttacagattgggagagagggcacaaata
tctttaagcaccggcgattatttttcaaaagggttcccaacaaatttttctgtactgatc
gtagcgaggcccactccaggtcaaatctactcattgttcactctatacagtgaagaaggg
gacgaacaactttcgatcagtgtcggtagagatgtcagcgtttactatgaagacaccgac
gaaatgcctcttgaaggaaaccacataccttttgaattatcaatggatgatggaaagtgg
catcgattagcctttagttttaagggtgattccgttaccctaatatacgactgtgcgaat
acgataacgaaatcattggccagggaatccacatccaaacttagcacatcaggaatcatg
aatattggattccaattagctgatgaggggtattatgagggtgacgtacaactgttaaaa
atcgcccctactccagacgaggcatacaatttatgtacaaaacatgctcccgactgcaca
ggaagtatatctggttcttcccacagtagttcctaccattacagtagcagtggcggcggt
ggtggctacagctatagtagtagcagcagaagttctagttctactagcggtggcagcaat
ggccactatagcggttctggatctgagtcgggtgtcaaattcagttcttcgtcacaaagt
ggaaccagtgttggatcctcttcaggtgaaagcagtggttctagttttggatctgtggca
gttggtggaggtagtgcaggaacacttggaattaaagtggaaggtggaggtaattttaat
ggcgctggtgcaaatgttggaattggcgaaggaagttcaggaggtggaagtatagtgaca
cgtaatcatgcatcaatgaatagttcgggaaggggagaagctggatatgaagaagaaata
gatttcgagggattaaacaaatttatccaaggagcaggtggcacatacatcagtcaagaa
gggagtgaatctgtagactttgatcagaatgtaatgggtggacttagaggtgatatcgat
tatgaaagtaatacagatgtaccagaagttaataccatcaacaacacaactgatattcta
acagaaactgaatgggctaacacagaatcgcctgatggttacgatatgtcaccagttgga
ccagagtatggaaattctccttcaccctattatccaaatagaggtccttctggaccacat
ggttatccaggtcccccgggaccccctggtccaccaggacctaagggagagccaggacga
gatggtttaggtggtactgatggcatacctggtccacctggacatgtgtttatgattccg
ctcaacactcaaggtaacgaaaaaggtccagatagtcaaacagaaactttcaggcaaatg
ttatcgcaacatatgatggctatgagaggagttgaaggaccaatgggattaacaggtgtg
ccgggaccacaaggacctcctggacctgaaggtctcaaaggagaaccaggagaaatagga
gaaccagggccacgtggtgaaatgggaccacaaggcttaccaggcagagaaggtagacgt
ggaagaccaggtcgcgatggcgagagaggattaactggtccacctggaaataaaggagaa
caaggtttaattggtctgcctggattaccgggggataaaggcgaacgaggagaaagaggt
gttccaggagaacaaggtttaccgggtcacgacggtatgcaaggcgaagaaggtcctcca
ggactgccgggccttcctggagaacagggtcctcgtggattttctggtccaagaggtatt
ccaggtttgcccggccctccaggaattccaggaagtgaaggacctcctggttcaaaagga
catccaggtccaataggtcaacctggagccccaggacaaccaggatcatctggagcacca
ggtcctccaggaccacaaggtttactaggacctccgggtattatgggacctatgggtaaa
ccaggaattccaggactgccaggagctgaaggtttacccgggaacaatggatcacctgga
ttaccaggcagaaaaggagagccaggtttaccaggacatcaaggatcaattggatttcct
ggtgctagaggtgtaaaaggtgatgaaggaaaaagaggagcaactggtgaaaagggggac
aaaggcgaccggggactagaaggagaaaagggtgaaccaggtttaaaaggagagatagga
gctcaaggaccacaaggaatacctggtttggaaggaccagaagggccaaagggcttcgac
ggtcctcgtggtgaaactggacccgctggacccccaggagaaaagggtaaacaaggtatt
caaggttttgttggatatccaggatcaacaggtgaaaagggtgataaaggtgctactggt
agacttgggccaccgggtgaaaaaggagaaaggggtaatcctggaagcccaggagaacgt
ggtgaacaaggaccacgtggcttcagaggctacagaggtaaacgtggacaggatgggttg
caaggaccaaaaggtgatacaggtcaaccaggaccacctggtccttctggagaagtaggt
ccacctggttcagaagggcctaggggattatctggaccacctggatctccaggatcccac
ggtaaagacggtgtccctggcccacctggagaaagaggaccacctggtgaagcaggttct
ccaggaaaaccaggagaaccaggagttataggaccgcaaggtcctattggagaaccaggg
cctattggcgaaccaggaaccccaggacctccaggaattccaggcgaagcaggagttccc
ggtgaggcaggaaaagaaggggctccaggacctccgggaccacctggtaaacctggaata
tcaggcccaactggccttccgggatttccaggtgaaaggggccataatggtccaccgggt
ccaccaggattgaaaggagatgaagggccagctggcccagctggtccacaaggagacaag
ggcgcccagggcgaacctggaaaagaaggatctcctggacctgaaggaagaagaggccca
cctgggccacctggagctggaggagctaaaggagaacgtggcgaagcagggcctccggga
gtaagtggaagagatggacttccgggccaaagaggattaccaggagctccaggacctgtt
ggaccacctggtgaagatggagacaagggagatattggaccaccaggagaaaagggtttc
aaaggagctcaaggagaaccgggaccagtaggaagcccaggccctcaaggtattcgaggt
gaaataggaccagtgggaccaccaggagaaaaaggacccccaggagaaatgggacgacaa
ggttctaagggagaagatggccctaatggattgccaggtccggcaggaccagccgggcca
caaggactgccgggtcccccaggtcaaaaaggagaaattggagatttcggacagaggggt
ccccctggtcctgctggtacacctggtgaacaaggtgaacgaggtccaaaaggcgcagaa
gggttaccaggaccacgaggtccggagggattgcaaggacctaaaggcgacgatggacca
cctggtccaataggtcctcctggaaaagacggcagacctggtgaaacagggcctcaaggt
caaaaaggcgaagaaggaaaagtcggattacaaggaccacctgggcctagaggaccaata
ggaccagaaggtagtaaaggatcagccggacctccaggttttccgggaccaccaggagaa
ccaggtcttactggtttaaagggggaaccaggtaaagatggtgaacaaggaaaacaaggc
gaagcaggtgcaccaggagatacaggtttacctggcccaattggccctcccggaccagca
ggacgacccggtccagaaggtcctgcaggtttacaagggaatactggattaccaggggaa
aaaggtgataaaggaacaattggagcaccaggattgcaagggcagactggatctcaaggt
ataccaggtcctcaaggtttaccaggattgagaggatcgccgggtccagcaggggagacc
ggtccgccgggtaatccaggaattccaggtgaacaaggaaaaataggtgaaaccggtccc
actggacctaagggtgatcgcggtaggagaggtcctaaaggacatagaggagatccaggt
ctgaatggacttaaaggagaccgaggagataaaggtcagaaaggggagcgaggagatcgt
ggacctgaagggccaaaaggcgacattggaccagttggacccattggtttcaaaggtaat
gatggtcctgctggacttccaggaatggaaggaccacctggacctaaaggacaagaagga
gttgctggaatgaaaggagaatcaggtccaccaggtcctcctggaccaccaggacctcca
gctgaaatgccacttcttcctcctgagattctatttcagaaagaactatcgcgatctaag
agagatcttggagatttaattaacgaatatgaagaaattgtggaaacaactaaaaaaact
gatacttcaggcgacgaaaacgtcaatacaaataatgatgacaaccataaattcttagat
atgtacaacgagatttacagaatgaggcgtgatctcgaaggaactaaaaaaccagtggga
acgcgagacaatccagttcgaacttgcagagatctgtactacggacatcctcaatttaat
gatggatggtattggattgatcccaatttgggcatgaaagatgatgcaatttatgtttat
tgtaatatgactgctgaaggagaaacttgtgtatcaccagataagcacagctcaagtatg
cccaatataccatggagaaaagaaagtcctaagaaagagtggtactccaatttacggggg
ggctttagaataacatacgaggcagtcggtacagtgcaaatgaacttcctgcgtcttctt
tcaagtgaagtatatcaaaatttcacatactcgtgtataaacagcgcagcttggtttaat
cagaacacccacaagttcgatatggcgataaaacttttaggtcaaaatgaacacgaattc
acgcacaccaactctaaaaatattgtcattgaagataaatgtaaatttagaaagaataag
gcagaaacaatattcgagattagaacgaagaaaatgcaacaattgcctatcattgacttt
ttgccagtggactacggagcacccaaccaagcattcggattttcagttggagcagtttgc
tttaaataa

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