Aquincola tertiaricarbonis: MW290_00660
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Entry
MW290_00660 CDS
T08158
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ater
Aquincola tertiaricarbonis
Pathway
ater03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ater00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
MW290_00660 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ater03400
]
MW290_00660 (recD)
Enzymes [BR:
ater01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
MW290_00660 (recD)
DNA repair and recombination proteins [BR:
ater03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MW290_00660 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
UvrD-helicase
Helicase_RecD
RecD_N
SLFN-g3_helicase
SH3_13
AAA_16
DEAD
AAA_22
UvrD_C
AAA_25
T2SSE
CbiA
nSTAND3
AAA_28
PIF1
PhoH
ATPase
Motif
Other DBs
NCBI-ProteinID:
URI07170
LinkDB
All DBs
Position
1:141871..143742
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AA seq
623 aa
AA seq
DB search
MSDVVDGATAWLAQGLGDWLQRWSLEQGAEAADAAVARTAGQALSLATREGHVCLPLAAL
QTAQATPGDDPPPAPTALLRDQAAWRAALLRSRVVGTPAEPGAMPLVLDDDDRLYLHRYF
DYERRLARRLALSAQAAPTLPTPEVAKRLQQLFKPNAALLGGQADWQQLAAALALRGKLA
VVSGGPGTGKTTMVVNLLACLLTQQPDARIALAAPTGKAAARMTDALRQRAAHLPAELRD
RLPASAATIHRLLGATPEGFAHDAQNPLPIDALVVDEASMLDLALATRLLEAVPPQARIV
LLGDKDQLAAVESGAVFAELSADPGLSDAARTDLAALTGTPPLIIEPPEAARPSALQDSA
VWFTRNFRFAADSGIGRLATEINTGQSAAVLRRLRSGEDDEVQWLHDDGPLLSDATVAAA
AAGYQPLWLALQAAPHDVAGATAAYERFRVLCAMREGPRGLLRLNELLTQRARAAAPGEA
LPGPWYTGRPVMVLRNDPLLRLFNGDVGLTLPAEDGTLLVWFPDANAPGGYRPVAPVRLP
PHETAYAMTVHKSQGSEFDQVLVVMPARASRLTTRELLYTAVTRARRQVRIASAEEPLAA
AIQSPTQRDSGLLARLGEVVRAG
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatgttgttgacggcgccaccgcctggctggcccagggcctgggcgactggctg
cagcgctggagcctggaacaaggcgccgaggccgccgatgccgccgtggcccgcactgcc
ggccaggccttgagcctggccacgcgggagggccatgtgtgcctgccgctggcggccctg
cagaccgcgcaggccacgccgggggacgacccaccgcctgcgcccaccgccctgctccgc
gaccaggcagcctggcgcgccgccctgctgcgctcacgcgtcgtcggcacccccgccgag
ccaggcgccatgcccctggtgctggacgacgacgaccgcctgtacctgcatcgctacttc
gactacgaacgccggctggcccgccgcctggcgctgagcgcgcaggccgcacccacgctg
cccacgcccgaggtggccaagcgcctgcagcagctcttcaagcccaatgccgcgctgctg
ggcgggcaggccgactggcagcagctggccgccgcgctggcgctgcgcggcaagctggcg
gtggtgagcggcggccccggcaccggcaagaccacgatggtggtcaacctgctggcctgc
ctgctgacgcagcagcccgatgcccgcattgcgctggccgcgcccaccggcaaggccgcc
gcccgcatgaccgatgcgctgcgccagcgcgccgcccacctgcccgccgagctgcgcgac
cggctgcccgcttccgccgccaccatccaccggctgctgggcgccacgcccgaaggcttt
gcccacgatgcgcagaacccgctgcccatcgatgcgctggtggtggacgaagcctcgatg
ctggacctggccctggccacgcggctgctggaagcggtgccgccgcaggcccgcatcgtg
ctgctgggcgacaaggaccagctggccgcggtggaatcgggcgccgtgttcgccgagctg
agcgccgatcccggcctgagcgacgccgcccgcaccgacctggccgccctcaccggcacg
ccgccgctgatcatcgagccgcccgaagcggcccggcccagcgcgctgcaggacagcgcc
gtctggttcacccgcaacttccgcttcgcggccgacagcggcatcggccgcctggccacc
gagatcaacaccggccagtcggcggcggtgctgcgccggctgcgcagcggcgaagacgac
gaagtgcagtggctgcacgacgacggcccgctgctgtccgatgccacggtggccgccgcc
gcggccggctaccagccgctgtggctggcgctgcaggccgccccgcacgacgtggccggc
gccaccgcggcctacgagcgcttccgggtgctgtgcgcgatgcgtgaaggcccgcgcggg
ctgctgcggctcaatgagctgctgacccaacgcgcccgcgccgccgcgcccggcgaggcc
ctgcccggcccctggtacaccggccggccggtgatggtgctgcgcaacgatccgctgctg
cgcctgttcaacggcgacgtgggcctgacgctgccggccgaagacggcacgctgctggtg
tggttcccggatgccaacgcccccggcggctaccgcccagtggccccggtgcggctgccg
ccgcacgaaacggcgtacgcgatgacggtgcacaagagccagggctcagaattcgaccag
gtgctggtggtgatgcccgcccgcgccagccgcctgaccacgcgcgaactgctttacacc
gccgtcacccgcgcccgccgccaggtgcgcatcgccagcgccgaagaacccctggccgcc
gccatccagtcgcccactcagcgcgattcgggtctgctggcccggctgggggaggtggtc
agggcggggtga
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