Arabidopsis thaliana (thale cress): AT1G22760
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Entry
AT1G22760 CDS
T00041
Symbol
PAB3
Name
(RefSeq) poly(A) binding protein 3
KO
K13126
polyadenylate-binding protein
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03015
mRNA surveillance pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
AT1G22760 (PAB3)
09123 Folding, sorting and degradation
03018 RNA degradation
AT1G22760 (PAB3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT1G22760 (PAB3)
03041 Spliceosome [BR:
ath03041
]
AT1G22760 (PAB3)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
AT1G22760 (PAB3)
mRNA cycle factors
Stress granule specific factors
AT1G22760 (PAB3)
Spliceosome [BR:
ath03041
]
Complex C
Other components
Complex C specific factors
AT1G22760 (PAB3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_7
Nup35_RRM
Motif
Other DBs
NCBI-GeneID:
838882
NCBI-ProteinID:
NP_173690
TAIR:
AT1G22760
UniProt:
O64380
A0A654ED08
LinkDB
All DBs
Position
1:8055325..8059060
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AA seq
660 aa
AA seq
DB search
MAAAVATGVAPATMVDQVPSPTAQTSVQVPVSIPLPSPVVVADQTHPNSSLYAGDLDPKV
TEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIR
IMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGF
VQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEI
GEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLY
VGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTS
SKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQAL
FSQIRAPGPMSGFHHPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGFQPQFMPGMRPGSG
PGNFIVPYPLQRQPQTGPRMGFRRGATNVQQHIQQQQLMHRNPSPGMRYMNGASNGRNGM
DSSVPQGILPPIIPLPIDASSISHQKAPLLPISKLTSSLASASPADRTRMLGEQLYPLVE
RHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLRLSVDPTDHDLGFSTTD
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggttgccacaggtgttgcaccggcgacaatggttgatcaagttcccagt
ccgacggcgcagacttcggttcaggttccggtttcaatacctcttccatccccggtcgtg
gtagccgatcaaacccacccgaactcgtcgctctatgccggtgatctggacccgaaagtt
actgaagcacatctatttgatttgttcaaacatgttgctaatgtcgtctcggtaagagtt
tgccgcgatcagaatcgtcgatctttgggatatgcctacatcaatttcagtaaccctaac
gatgcttaccgtgcaatggaggccttgaactacactcccctctttgataggcccattcgg
atcatgctttcgaaccgtgacccaagcacgcgattgagcggcaaaggaaacattttcatc
aaaaaccttgacgcttcaatcgacaacaaggccttgttcgagacgttttcaagttttgga
accatcctctcatgcaaagttgcaatggacgtgactggccggtccaaggggtatggattt
gtccagttcgagaaggaggaatcggctcaagccgcaattgacaagctaaacggaatgtta
atgaacgacaagcaagtttttgtgggacacttcatcagacgtcaagagcgtgctcgtgat
gaaaacacccctacaccgcgtttcactaacgtgtacgtcaagaatctccccaaggagatt
ggtgaggacgagctacgaaaaacgtttggtaaatttggagtgatatcgagcgcagttgta
atgagggaccagagcggaaactcgaggtgtttcgggtttgtgaattttgagtgcactgaa
gcagcggcttcggcggttgagaagatgaatggaattagcttaggggatgatgtgttgtac
gttgggagggcgcaaaagaagtctgagagagaggaagagctaagaaggaagtttgagcaa
gagaggataaaccggtttgagaaatctcaaggagcgaacctgtatttgaagaatcttgat
gatagtgttgatgatgagaaactcaaggagatgttctctgagtatggaaatgtgacatcc
tccaaggttatgcttaatccacaaggaatgagcagaggatttggttttgttgcttattcc
aatcctgaagaagctttaagagccctgagtgaaatgaatgggaagatgatcggaagaaaa
cctctatacatagctcttgcgcagcgcaaagaagatagacgagcacacttacaggcgttg
ttttcacagattagagcaccagggccaatgtcagggttccatcacccgccaggtggacca
atgcccggtccacctcaacacatgtacgtaggccaaaacggagcaagtatggtcccgtcc
cagcccattggatatggattccagcctcagttcatgcccgggatgcgtccaggttctggc
ccgggcaacttcatcgtgccttatccgcttcaaagacaacctcagaccggtcctcgtatg
ggattcaggcgtggtgctactaacgtgcaacaacacatccaacaacaacaacttatgcac
cgtaacccgtccccgggaatgagatatatgaacggtgcgagtaacgggaggaacggaatg
gattcgagtgttcctcaaggaatcttacctcctatcattcctttgccaatagatgcttct
tcgatctctcaccagaaagctcctctccttccaatctctaagctcacttcttccttagct
tctgctagtccagctgatcgcactcggatgcttggagaacaactgtacccacttgtggaa
aggcacgaaccacttcacgtggctaaagtcacaggaatgttgttggagatggatcaagct
gagatcttgcacctgatggagtcaccagaggcactcaagtctaaagtatccgaggctttg
gatgttctcaggctatctgttgatccaactgatcatgatcttggtttctctaccaccgac
tga
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