Arabidopsis thaliana (thale cress): AT1G71770
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Entry
AT1G71770 CDS
T00041
Symbol
PAB5
Name
(RefSeq) poly(A)-binding protein 5
KO
K13126
polyadenylate-binding protein
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03015
mRNA surveillance pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
AT1G71770 (PAB5)
09123 Folding, sorting and degradation
03018 RNA degradation
AT1G71770 (PAB5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT1G71770 (PAB5)
03041 Spliceosome [BR:
ath03041
]
AT1G71770 (PAB5)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
AT1G71770 (PAB5)
mRNA cycle factors
Stress granule specific factors
AT1G71770 (PAB5)
Spliceosome [BR:
ath03041
]
Complex C
Other components
Complex C specific factors
AT1G71770 (PAB5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_occluded
RRM_7
Motif
Other DBs
NCBI-GeneID:
843507
NCBI-ProteinID:
NP_177322
TAIR:
AT1G71770
UniProt:
Q05196
A0A178WJE2
LinkDB
All DBs
Position
1:complement(26990525..26994259)
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AA seq
682 aa
AA seq
DB search
MAAAVASGIAPTTAMVDQVIPNQPTVAAAAPPPFPAVSQVAAVAAAAAAAEALQTHPNSS
LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLN
YAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD
VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTN
VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN
GISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKE
MFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRK
EERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQP
MGYGYQVQFMPGMRPGAGPPNFMMPFPLQRQTQPGPRVGFRRGANNMQQQFQQQQMLQQN
ASRFMGGAGNRRNGMEASAPQGIIPLPLNASANSHNAPQRSHKPTPLTISKLASDLALAS
PDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVL
RRSADPAAVSSVDDQFALSSSE
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggctgcggcggttgcatctggaattgccccgacgacggccatggttgatcaagtgatc
cctaatcaacccacggttgctgctgctgctcctcctcctttccctgccgtgagtcaggtt
gcggcggttgctgctgctgctgctgccgcggaggctttgcaaacccatccaaactcgtct
ctctatgtcggagatttagatccgagtgtcaatgagtcacatctcttggatctctttaat
caagttgctccagttcacaatcttagggtttgtcgtgatctgactcatcgttctcttggt
tacgcttacgtcaatttcgctaaccctgaagatgcgagtcgtgcgatggaaagtctcaac
tatgctccgatcagagacaggcctataaggatcatgctctctaatcgtgatccgagcact
agattgagtgggaaaggcaatgttttcatcaaaaaccttgatgcatcgattgataacaaa
gctttgtatgaaactttctcgtctttcgggacgattctctcttgcaaggttgcaatggat
gtggtgggacgttcgaaaggatatggctttgtccagtttgagaaagaggaaaccgctcag
gctgctattgacaagcttaatggtatgttgcttaatgataagcaagtctttgttggccat
tttgtccgtcgtcaagacagggcacgtagtgagagtggtgcggtgccgagcttcactaac
gtttatgttaagaatcttcctaaggagattactgatgatgagcttaagaagacttttggg
aaatatggagatatttctagtgcggttgtgatgaaggatcagagtgggaactcgaggtct
ttcgggtttgtcaactttgtgagccctgaagctgctgcagttgctgttgaaaagatgaac
ggtatcagccttggggaggatgtgttgtatgttggtagggcacagaagaagtctgatagg
gaagaggaattgaggaggaagtttgagcaagagaggataagcaggtttgagaaattgcaa
ggatcgaatctgtatttgaagaaccttgatgatagtgtgaatgatgagaagctcaaggag
atgttctctgagtatgggaatgtgacttcctgcaaggttatgatgaattcacaaggttta
agcagaggttttggttttgttgcttactccaatcctgaagaagctttattagctatgaaa
gaaatgaatgggaagatgataggaaggaaacctctttacgttgctttggcacaacgtaag
gaagaaagacaggctcaccttcagagtctatttactcaaatcagatcacctggaacaatg
tcaccagttccatcaccgatgtctgggttccatcatcacccaccaggtgggccaatgtca
ggaccacaccatccaatgttcataggccataacggtcaaggtttggtaccttcacagcct
atggggtatgggtaccaagttcagttcatgcctgggatgcgtccaggtgcaggcccgcct
aacttcatgatgcctttccctcttcaaaggcaaactcagcctggccctcgtgttgggttc
aggcgtggtgctaataacatgcagcagcagtttcagcaacaacaaatgctgcagcaaaat
gcaagcagattcatgggaggcgcaggcaacaggaggaatggaatggaagcatctgctcca
caaggcatcatccctttgccattgaatgcatctgcaaactctcacaatgctccgcaacgc
tctcacaagccaactcccctcaccatttctaagctcgcatctgatttggctttggctagc
cccgacaaacacccacggatgcttggggatcatctttacccacttgtggagcagcaggag
ccagcaaatgctgctaaagttaccgggatgttgctggagatggatcaagctgagattttg
caccttcttgagtcacctgaagctcttaaggctaaagtgtccgaggctctggatgttctc
agacgctctgctgatccagcagctgtgtcatctgttgatgaccagtttgctctatcctca
tccgagtga
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integrated database retrieval system
