Arabidopsis thaliana (thale cress): AT4G16310
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Entry
AT4G16310 CDS
T00041
Symbol
LDL3
Name
(RefSeq) LSD1-like 3
Organism
ath
Arabidopsis thaliana (thale cress)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Amino_oxidase
SWIRM
NAD_binding_8
DAO
Thi4
HI0933_like
Pyr_redox_2
FAD_binding_3
FAD_binding_2
FAD_oxidored
Pyr_redox
Pyr_redox_3
Lycopene_cycl
AlaDh_PNT_C
SRI
MurD-like_N
GIDA
NAD_binding_9
Med26
Enoyl_reductase
Shikimate_DH
NAD_binding_7
Motif
Other DBs
NCBI-GeneID:
827325
NCBI-ProteinID:
NP_001319957
TAIR:
AT4G16310
UniProt:
F4JLS1
A0A654FPU5
LinkDB
All DBs
Position
4:9217988..9226280
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AA seq
1628 aa
AA seq
DB search
MDGKEKKSGSKRGSKVFQFDDDADDDEPIGSLLEIMKHKSSKKDKVETESTGKQRQKQVV
EKKLSALGKDSEDMDDTLASFRKRLKGNKKGVESGTSRVRNHEGVDTVTNSNLKPIEEAN
KNEVQSVLLRENGASNSIQKCASETGTLLHKFSGKDKAASPSHEKVETVSSEKEADVFHQ
ITKEESEIPMSEKAVELSRVSVPMPDVHGEVNCTIAPDKHIHLGEPTSESGYYREKNLVM
CDCGTQFNFEDRSFESNTQVTLCQKCKYSSHHNASNGGGIQVNTLEDGTAQASPVSIIPC
EDENFRGDAISLPNSGKPSTLQRPERIAKKRKLGNMVYEGDVKWENEQGFLDCQSDKSFK
GSDKCGFVPSISKEIEIGRAAAVTAGLKAQSVSPIEKIILKEVLKRKGSNQEYLVCRNSI
LGLWSKNVSRILPVTECGVTGGPSESELPSASLIREVYKFLDQRGYINAGISSVNGKAAS
STNQDYDLLQGRQLEESSMASVADSEEGVAFILGQVKAVESTSEGKKCALQNDERDLVGC
ATSEMLESISKKCEASIIDDNKRSVSMNALQDSTASNVEKHPETFSVAKPALSSTLSSAH
SNQMRGRDCVPCEVIDEKKVIVIGAGPAGLTAARHLQRQGFSVTVLEARSRVGGRVFTDR
SSLSVPVDLGASIITGIEADVPSERMPDPSVLVCNQLGLELSVLHGFCPLYDTVTGKKVP
AELDDALQAEFNSLIDDVDLLVEEIGKERANKMSLEDGLEYGLQRLRMPHDKVNIDKFGL
LNSSSKTGIRGPFMQDESWKDDFLNPLERRVMNWHFAHTEYGCAAVLKEVSLPHWNQDEF
YGGFGGPHAMIKGGYSRVVESLAEGLDIHLNKIVSDVSYVSDVSAMDNSKHKVRVSTSNG
CEYLGDAVLVTVPLGCLKAETIKFSPPLPDWKYASIKQLGFGVLNKVVLEFPTVFWDDSV
DYFGATAEETDLRGECFMFWNVKKTVGAPVLIALVVGKAAFEYTNKSKSEHVNHAMMVLR
KLFGGDLVPDPVASVVTDWGTDPYSYGAYSYVAIGASGEDYDVLGRPVQNCLFFAGEATC
KEHPDTVGGAMMTGVREAVRIIDILRSGNDYTAEIETLEKAQRKSVPVRDEVRDLIKRLE
VVELSNVLARQSLLRNMFFSAKTTVGRLHLAKELLNLPGETLKSFAGTKEGLAVLNSWIL
DSMGKNGTQLLRHCVHILVRVTSDLFALRLSGIGKTVKEKVCAHTSRDIRAIASQLVNVW
LDLYRKEKANSGKKSLRQANTTNTSRIRRKLNSPDTDSKGKLSNGNDVKTDEEFEDNQLP
MSEEEKAVFAEAEAARAAAEAAAKAFSEAYHNTSLQLPKIPSFHKFARREQYAKMDESDF
RKKFPGNVLGRQDCMSEIDSRNCKVRDWYDFPASCLDLDSARIPVDNYSQPSHSNELVSH
SKFRECSGESVAADTSFLTGAWVDTGGSSDGFKDSQAIDRWQSQAAAADPEFFNRTLHIK
DEEDSIACSTGPPSWKHDQRANECSVSQVTVNKEPHKNHIRSADRLKQGVVDFVASLLMA
PYRAKKIDRDVYKSIMKKTATKVMQHTTDVEKAMAVTQFLDSKRKNKIRDFVDKQVDKYM
VIPQVPKP
NT seq
4887 nt
NT seq
+upstream
nt +downstream
nt
atggatggtaaggagaagaaatctggttccaagagaggatctaaggtttttcagtttgac
gatgatgctgatgatgatgaacctattggatctctcttagagattatgaagcataaaagt
tccaagaaggataaggttgagacagaaagtactggtaaacagaggcagaaacaggttgtg
gaaaagaagctgagtgctttgggcaaggattctgaagatatggatgacacattagccagt
tttaggaagaggttgaagggtaacaagaaaggtgttgaatcaggaacctcaagagttagg
aaccacgagggtgttgatactgtaacaaattctaatttgaaaccaattgaggaagccaac
aaaaacgaggtgcagagtgtattacttagggaaaacggtgcttctaattctattcaaaaa
tgtgcttcagaaactggaaccctcttgcataagttttctggtaaagataaggcagcctct
cccagtcatgaaaaagtagaaacagtatccagtgagaaggaagcagatgtctttcatcaa
attacaaaggaggaatccgagataccaatgtcagagaaggctgtggagctatccagggtg
tctgtccccatgccagatgtccatggcgaagttaattgtactattgctcctgataagcac
atacacttgggagagccaacttcagagtccggttattaccgagagaagaatttagttatg
tgtgattgtggtacccaatttaattttgaggatcgttcctttgagtctaatactcaggtt
actctctgtcaaaagtgcaagtattcttcacaccataatgcttctaatggaggtggtatt
caagttaatactctagaagatggaactgctcaagcttcgccggtttctataattccctgc
gaagatgaaaatttccgaggggatgcaatttcactacctaattctgggaagccatcgacc
ttgcaacgcccagagcgtattgctaaaaagcgtaagcttggaaacatggtgtatgaagga
gacgtgaaatgggagaatgagcaaggctttcttgattgtcaaagtgacaagtcctttaag
ggaagcgacaagtgtggttttgttccatctatttccaaggaaattgaaattggtagagca
gctgcggtaacagctggacttaaagcccagtcagtaagtccaattgagaagattatactt
aaagaggtgttgaagcgcaaaggtagcaatcaggagtacctagtttgcaggaactctatc
ttaggcctgtggagtaaaaatgtcagccgaatcttacctgtcactgaatgtggtgttacc
ggaggcccttctgagagtgaattgccttcagcttcccttatcagagaagtctataagttt
cttgatcagagaggttatataaatgctggaatttcatctgtgaatggaaaggcggcatct
tcgactaatcaagactatgatctcctccaggggagacagcttgaagaaagttctatggct
tctgttgcagattctgaagagggagttgcttttatccttggtcaggtcaaagccgttgaa
tcaactagtgagggtaagaaatgtgctctccaaaacgatgaaagggacttggtaggatgt
gcgacctcggaaatgttggaatctatcagcaaaaaatgcgaagcaagcattattgatgat
aacaaacgttctgtgagcatgaatgctttacaggatagtactgcatctaatgttgaaaag
catcctgaaacattttcagtagcgaagcctgctttgtctagcacactctcctctgcacat
agtaatcaaatgagaggaagggactgtgttccatgtgaggttatagatgagaagaaagtt
atagtaattggagctggtcctgctggattaacagcagcacgtcatttacagcgccagggt
ttttctgtaaccgttcttgaggcaaggagtagagtaggtggtcgtgtatttacagaccgg
tcgtctctttcagttcctgtggatcttggggctagcataattacaggcattgaggctgat
gtgccatctgaaagaatgccagatccatcggtattggtctgtaaccaattaggtctggag
ttgagcgtgttacatggattctgtcctctttatgatactgtaacagggaaaaaggttcct
gcagaattagatgatgctctacaagcagagttcaacagtctaattgacgatgtagatttg
cttgttgaggaaataggcaaggaaagagcaaataaaatgtctcttgaggatggtctagaa
tatggccttcaacggctgagaatgccacatgacaaggtgaacattgacaaatttgggctt
ctcaattcaagctcaaaaacgggcatcagaggtccctttatgcaggatgaaagctggaaa
gatgattttttgaatcctttggagcgaagagttatgaattggcattttgctcacacagaa
tatggttgtgctgctgtcctcaaggaagtttcgcttcctcactggaatcaagatgagttt
tatggcgggtttggagggcctcatgctatgattaagggtggttatagccgagttgttgag
tcgcttgcagaaggactggacattcacttaaacaaaatagtttcagatgtatcttatgtc
tctgatgtatctgccatggataacagcaagcataaagtcagagttagtacatcaaatggc
tgtgagtatcttggagatgctgttctggtaactgttccacttggatgcttgaaagcagaa
actattaagttttcaccacccttgccggactggaaatatgcgtcaatcaaacaacttggt
tttggagttctaaataaagttgttttggagttcccaacggtattttgggatgatagtgtt
gattactttggggcaactgctgaggaaacagatctaagaggtgagtgctttatgttttgg
aatgtcaaaaaaactgttggtgctcctgtcctgatagctttggtggttgggaaggctgct
tttgaatatacaaacaagagtaagtctgagcacgtgaaccatgcaatgatggttcttcgg
aagctttttggtggggatctggttcctgatcctgtcgcctcggtagttactgactggggc
actgatccttacagttatggtgcctactcgtatgttgctattggtgcttctggtgaagat
tatgatgtattgggaaggcctgttcagaattgtttgttttttgctggtgaggcaacatgc
aaagagcatcctgacactgttggtggtgcaatgatgactggagtccgggaagctgtgcgt
ataattgatatacttagaagtggaaatgattacacagccgaaatagaaacactagaaaaa
gcgcagaggaaatctgtacctgtaagggatgaagtcagagacctaataaagaggctggaa
gttgttgagctgtctaatgtgctagccaggcaatcattgctacgaaacatgttcttctct
gccaaaacaactgtcgggcgtttgcatttagccaaggagttgcttaacctacctggtgaa
accttgaaatcctttgcaggtacaaaagaagggcttgcagtgctgaactcttggatcctg
gattcgatgggtaagaatggaacccagcttttacgtcactgtgtacatattcttgttcga
gttacgagtgacctctttgccttgaggctatcaggtattgggaagactgtgaaagaaaag
gtttgtgcacacacgagccgtgatattcgtgccattgcaagtcagcttgttaatgtgtgg
ctggatctataccggaaagaaaaagctaatagtggaaagaaatcgttgagacaagcgaat
actacaaacacctctagaataagaagaaaactgaatagtccggacacagacagtaaggga
aagctgagcaatggcaacgatgtgaaaacagatgaagagtttgaggacaaccagctacct
atgtcagaggaagagaaggctgtgtttgctgaagctgaggcggctcgtgcagcagcagaa
gcagctgcaaaggcattttctgaggcctatcataatacttcattgcagcttcctaagatc
ccctcatttcataagtttgccaggcgagagcagtatgcaaagatggacgaatctgatttc
aggaaaaagtttcctggaaatgtcttaggaagacaagattgtatgtcagagattgactcg
aggaactgcaaagttagggactggtatgattttcctgcctcgtgccttgaccttgacagt
gcaaggattccagttgataactattcacagcctagccattcgaatgagcttgtatctcat
tcgaagttcagagaatgttctggagaaagtgtggctgcggataccagtttcttaactggg
gcatgggttgatactggtggtagtagcgatggtttcaaggattctcaggctatagataga
tggcaatctcaagctgctgctgctgatcctgaatttttcaatcgtactttgcatataaag
gatgaagaagattcgattgcttgttcgactggccctcctagttggaagcatgaccaacga
gcgaatgaatgttccgtgtcacaggttacagtgaataaagagccacataaaaatcatatc
cggagtgcagatcgtttgaaacagggagttgtagattttgttgcatcgttgcttatggcc
ccgtatagagcaaagaaaattgatagagatgtatacaagtcaattatgaagaagacagca
acaaaggttatgcaacatacaacagatgtggagaaagctatggctgttacacagttcctc
gactcaaagcggaaaaataagattcgtgactttgtggacaaacaagttgacaagtacatg
gtgatacctcaagttccaaaaccttga
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integrated database retrieval system