Arabidopsis thaliana (thale cress): AT4G36630
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Entry
AT4G36630 CDS
T00041
Symbol
EMB2754
Name
(RefSeq) Vacuolar sorting protein 39
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
AT4G36630 (EMB2754)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ath04131
]
AT4G36630 (EMB2754)
Membrane trafficking [BR:
ath04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
AT4G36630 (EMB2754)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_2
Vps39_1
CNH
Clathrin
zf-HC5HC2H
AlaDh_PNT_N
zf-HC5HC2H_2
Motif
Other DBs
NCBI-GeneID:
829815
NCBI-ProteinID:
NP_195381
TAIR:
AT4G36630
UniProt:
Q8L5Y0
A0A178UXB5
LinkDB
All DBs
Position
4:complement(17271764..17276626)
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AA seq
1000 aa
AA seq
DB search
MVHNAYDSFQLLKDCPARIDAVESYGSKLFAGCYDGSLRIYSPPESSASDPSELHQETYV
LEKTVAGFSKKPIVAMEVLASRELLLSLSESIAFHGLPNLETVAVITKAKGANAYSWDDR
RGFLCFSRQKRVCVFKHDGGGGFVEVRDYGVPDTVKSISWCGENICLGIKKEYVILNTAN
GTLSEVFPSGRVAPPLVISLPSGELILGKENIGVFVDQNGKLLQTERICWSEAPTSIVIQ
NPYAIALLPRRVEVRLLRSPYPLIQTIVLQNIRRLVKSNNAVIVGLDNSVYVLFPVSIGA
QIVQLTASGNFEEALALCKVLPPDESSLRAAKESSIHTRFAHYLFENGSYEEAMEHFLAS
QVDITHVLSMYPSIILPKTTIIPQPDKMVDISGDEASLSRGSSGISDDMESSSPRYFLES
EDNADLESKKMSHNTLMALIKYLLKRRPAVIEKATSEGTEEVISDAVGKTYGANDSSKSK
KSSKGRGMIPLNSGAREMAAILDTALLQALLHTGQSGAAIELLKGVNYSDVKICEEILMK
SKNYSALLELFKSNSMHHEALKLLNQLADESKTNQSQTDVTQIFSPELIIEYLKPLCRTD
PMLVLEYSMLVLESCPTQTIDLFLSGNISADLVNSYLKQHAPNMQGRYLELMMAMNDTAV
SGNLQNEMVQIYLSEVLDLYAAKSAQQKWDEKDHPPERKKLLSALESISGYSPQPLLKRL
PRDALYEERAVILGKMNQHELALSIYVHKLHAPDLALAYCDRIYESVTYLPSGKPSSNIY
LTVLQIYLNPKKSAKDFAKRIVALGSFESSDTTKMMDSVLSSKAKGGRSKKIVAIEGAED
MRVGLSSSTDSGRSDVDTEEPLEEGDSTVMISEVLDLLSQRWERINGAQALKLLPRETKL
HNLLPFLAPLLRNSSEAHRNFSVIKSLRQSENLQVKEELYKHRKGVAQVTSESMCSLCNK
KIGTSVFAVYPNGKTLVHFVCFRDSQGMKAVSKTTHGRRR
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atggttcacaacgcttatgattcgtttcagcttctcaaagattgtcccgctaggatcgat
gctgttgaatcctacggctccaagctcttcgctggatgttatgacggttctctccgcatt
tactctccaccggaatcttctgcctccgatccgtcggagctgcatcaagagacttacgtg
ctagagaagacggtagctggattctctaagaaaccgattgtggcgatggaggttttggct
tcgagagagttgcttttgtctctctctgagtcaattgcgtttcatggacttcctaatttg
gagactgttgctgtgattactaaagctaaaggtgctaatgcttattcttgggatgatcgg
cgtgggttcttgtgtttctctaggcaaaagagagtctgtgttttcaagcacgatggagga
ggaggatttgtagaggtcagagactatggagttcctgatactgtcaagtctatttcttgg
tgtggagaaaacatctgtttaggcattaagaaagagtatgtgatacttaatactgctaat
gggactctctctgaggtgtttccttctggtagggttgctcctcctctcgtgatatctcta
ccttctggtgaacttattttgggaaaggagaacattggagtttttgttgatcaaaatggg
aagctccttcaaacagagagaatctgttggtcagaggccccaacgtctattgtcattcaa
aacccttatgcgatagccttgttacctcgtcgagttgaggttcgcttgctccgaagtcca
tatcctttaatacagacaattgttcttcaaaacattcgtcgcctggtcaagagcaacaat
gctgtgattgttggtttggataactctgtttatgttctcttccctgtctctattggtgcc
cagattgtgcaattaacagcttcgggaaattttgaggaagccttagctctatgcaaagta
ctcccccctgatgagtcaagcctacgagctgcgaaagagagttcaattcacacaagattt
gctcattatctttttgagaacgggagctatgaggaagccatggaacacttcctcgcatct
caagtagatatcacgcatgtactttccatgtatccatccatcattcttcctaaaacaact
attattcctcaaccagataagatggtggacatttctggtgatgaagcatctctgtcaaga
ggttcatccggcatttcagatgatatggagtcttcatctcctcgatattttttggaatct
gaggacaatgcagaccttgaatctaagaaaatgagtcacaacactttgatggctcttata
aagtacttgctgaagaggaggccggctgttatcgagaaggccacttctgaaggaacagaa
gaggtcatttcggatgctgttggtaaaacttacggggcaaatgattcatctaagtctaag
aagtccagcaagggacgtggtatgatccctcttaattcaggtgcaagagagatggcagca
atccttgatacagctcttctccaagcacttctacacactggccagtctggagctgctata
gagttattaaagggtgtcaactacagtgacgttaagatttgtgaggagattctcatgaaa
agtaaaaattattctgcactattagaactgttcaagagcaattcgatgcaccatgaagcc
cttaagcttcttaaccagctggcggatgagtctaaaacaaaccagtcacaaactgatgtt
acacagatatttagtcctgagttgatcatcgaatatctcaagcctctctgcaggactgat
ccaatgcttgtcttggagtattctatgcttgtcctggaaagctgtccaactcaaaccatc
gacttgtttttgtctggaaatatctcagctgaccttgtcaattcgtatctgaagcagcat
gctccaaatatgcagggtagatatttagaacttatgatggcaatgaatgacaccgcagtt
tctggaaatctccaaaacgagatggtacaaatctatctttcagaagtgcttgacttgtat
gctgcaaagagtgcgcagcagaaatgggatgagaaggatcatcctcctgaaaggaaaaaa
ctattgtctgcgttagagagcatctccggatatagtccgcagcctttgttgaagcgtctt
ccacgtgatgctctctatgaagagcgtgcagttatattgggcaaaatgaaccaacatgag
cttgctttgtccatctatgttcataagcttcatgcacctgatctggcgctggcttactgt
gatcgtatatatgagtctgttacttatctaccatctggaaaaccgtcaagcaatatctac
ctcacagtgctgcaaatatacctgaatcctaagaaaagcgcaaaagactttgcaaaacga
attgtagctctaggatcattcgaaagttcagacaccacaaaaatgatggactctgtttta
tcttcaaaagctaaaggaggccgatccaagaaaattgttgcaatagaaggcgctgaggat
atgcgagttggtctcagtagcagcactgacagtggaagaagcgatgttgatactgaagaa
cccttggaagaaggagactccaccgttatgatctctgaagttcttgatctgttgagccaa
aggtgggagaggatcaacggtgcacaagccctcaagcttttgcctagagaaactaaactc
cataacctgcttccgtttcttgcaccccttctaagaaattcaagtgaagctcacagaaac
ttttcagtcatcaagagtttgaggcagagtgaaaacttacaggtgaaagaggaactatac
aaacataggaaaggagtagcgcaagtaacaagcgaaagcatgtgctcattgtgcaacaag
aagatagggacaagcgtatttgctgtttatcccaacgggaaaacgttagttcactttgta
tgcttcagagattctcaaggcatgaaagctgtttctaagacaacacatggaagaagacga
tga
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