Arabidopsis thaliana (thale cress): AT5G35910
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Entry
AT5G35910 CDS
T00041
Name
(RefSeq) Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT5G35910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT5G35910
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
AT5G35910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
833577
NCBI-ProteinID:
NP_198440
TAIR:
AT5G35910
UniProt:
A9LLI7
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All DBs
Position
5:complement(14029574..14035493)
Genome browser
AA seq
870 aa
AA seq
DB search
MSDGNMDVDESPVSWKVKSLEKLIDGSSFSSTLSRLSSSSRLIPTSRDFHFYYNFDEFKR
PIDEITGTSQSTLATIGDSEQVWGKSMKFPGDVDDVYAEDWLCNVNDELIERFDVSVDEF
QRIRKKEKEIGRSVVADDGDDGFQMVYGKKKKPVGNVVTGSAAVNGGGSVIDVKMAERDK
NSSGKAKVPFHVPTIKKPQEEYNILVNNANLPFEHVWLERSEDDLRAMHPLEKFSVLDFV
DKDVNEMEPVKPLPLEQTPFKFVQEVKDLKELVAKLRSVEEFAVDLEHNQYRSFQGLTCL
MQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLF
DTGQASRVLNLERNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYI
YDLIKLELQRMAKDDAHTDSPLLEVYKRSYDVCTQLYEKELLTENSYLHVYGLQAAGFNA
AQLAIVAGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMPDSVGKLRRMLKSKHPYIER
NVDSVVSVIRQSMQHYAAFESAALSLKDVSPGNVMDKNIEPISEKKDLHTGDVASPSLKE
NSSQLESTRDLIMGAANTNEGRGLGSGLFGSAKVSAAVRISKKPSSGLGALLGNAASKKK
SRTDEKVKEDVKLEQIRSSVNLSFHSFTEKVPDSKSTSETSPKVYGKPEEMSSTMPASVS
KEDGVKELKDDSEEASEIVGTSGRVSESKVSSSEMGDIILLENGDEKKVDAEDEPMSLSE
LSTNFQKCFKSMNKSKKAQKQTEFLNIEPFDYEAARKEVKFGEGHKGRQGKREAAAGQKK
GSTQEQSEFGQGKRRQAFPASGNRSMSFKN
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacggtaacatggacgtcgacgaatcaccagtctcttggaaggtaaagtctctg
gagaaattaatcgatggttcttctttctcttcgactctctcgagactctcatcgtcttct
cgcctaattccaacgagtagagattttcacttttactacaatttcgatgagttcaaacgc
ccaatcgatgagataactggaacctcgcaatcaactcttgcaacgatcggtgattccgag
caagtttgggggaaatcgatgaagtttcctggcgatgttgatgacgtatatgcggaggat
tggttatgtaacgtgaatgatgaattgattgagagatttgatgtttctgttgatgagttt
cagaggattaggaagaaagagaaggaaattggtaggtctgttgttgctgatgatggagat
gatgggtttcagatggtttatgggaagaagaagaagcctgttggtaatgtggttactggc
tcggcagcggttaatggtggtggttctgtgattgatgttaagatggctgagagggataag
aattcatctggtaaggctaaagttccttttcatgtaccaactataaagaagcctcaagag
gagtataacatattggtgaacaatgcgaatctaccgtttgagcatgtttggttggagagg
agcgaggatgatctgcgggctatgcatcctttggagaaattttcagtgcttgacttcgtt
gacaaagatgtaaacgagatggaacctgtgaagccccttccactggaacagactccattc
aagttcgtccaggaagtgaaagatctgaaagaattagttgccaaactgcgtagtgttgaa
gagtttgcggttgatctggagcataatcagtatagatcttttcaaggattgacatgcttg
atgcaaatttccaccagaacagaggattatatagttgatacatttaagcttcgtattcac
attgggccttatctaagggagatattcaaagaccctaaaaagaaaaaggtaatgcatgga
gcagatcgagatattatctggcttcaacgggacttcggcatatatgtctgcaatctcttt
gacacaggacaggcctccagggttctaaatttggagagaaatagcctggagtttcttttg
cagcatttttgtggagtgactgcaaataaagagtaccaaaatgcagactggagaataaga
ccccttccagaggaaatgacaagatatgcaagagaagatacccactacctcttatacata
tatgatttaatcaaactagaactgcagagaatggcaaaggatgacgcgcatactgactct
cctctacttgaggtctacaagcggagttacgatgtgtgcacacaactatatgagaaagag
ttattgaccgagaattcatatcttcacgtatatgggcttcaagcagcgggctttaatgca
gctcaacttgccattgttgcggggctttgtgaatggagggatttcattgcacgtgcggag
gatgagagcactggttatgtattgccaaacaaagttctccttgaaatagccaaggagatg
cctgatagtgttggaaaattgcgtcggatgttgaagtcaaagcatccttatatcgagcgt
aatgttgattcggtggtcagtgtcatcaggcaatcaatgcaacattatgcagcatttgag
tctgctgctctatctttaaaagatgtgtctcctggaaatgtaatggataagaatattgaa
cctataagtgagaagaaagacctgcacacaggagatgtggcttctccaagtctgaaggaa
aattcttcgcagcttgagagtaccagggacctaattatgggtgcagcaaatactaatgaa
gggagaggtttaggatccggcttgtttggttctgctaaggtttctgcggctgttcggatc
tctaagaaaccaagcagtggtttaggagctttgctgggaaatgcagcctccaagaagaaa
tctcgaactgatgagaaggtgaaggaagatgtgaagctcgaacagataagatcatctgta
aacctgtcattccattcgtttacagagaaagttcctgactcaaagtcaacttctgaaaca
tctccgaaagtttatgggaagcctgaagagatgtccagtactatgccagcctctgtttcc
aaggaagatggtgtgaaagagttgaaagatgattcagaagaagcctcagagatcgttggt
acttctggtagagtttcagagtccaaagtgtctagctccgagatgggcgatattatacta
ctagaaaatggtgatgagaaaaaagttgacgctgaagatgaaccaatgtctctctcggag
ttgtccacaaactttcagaagtgctttaaatccatgaataagagcaagaaggcccaaaag
cagaccgagtttttaaacatagagccttttgattatgaagctgcaaggaaagaggtgaaa
tttggggaaggacacaagggaagacaaggaaagagagaagctgcagcaggtcagaagaag
gggtctacacaggagcagtcagagtttggtcaaggaaaacggcgtcaagcttttccggca
tccgggaaccgaagtatgtcctttaaaaattga
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integrated database retrieval system
